Matrix_119 | RRTF1 | Not Available | | 91.90% |
Matrix_363 | RAP2.3 | Not Available | | 90.37% |
Matrix_288 | RAP2.3 | Not Available | | 88.01% |
Matrix_224 | ERF1 | Not Available | | 81.94% |
Matrix_50 | ATERF14; AT5G43410 | Not Available | | 81.04% |
Matrix_277 | RAP2.6 | Not Available | | 79.38% |
Matrix_409 | DEAR3 | Not Available | | 78.03% |
Matrix_244 | DREB2C | Not Available | | 76.53% |
Matrix_86 | CRF5; CRF6; CRF4 | Not Available | | 76.53% |
Matrix_355 | ERF10; ERF11 | Not Available | | 76.50% |
Matrix_473 | RRTF1 | Not Available | | 75.68% |
Matrix_448 | ATERF6 | Not Available | | 75.63% |
Matrix_57 | WIN1; SHN3; SHN2 | Not Available | | 75.45% |
Matrix_326 | AT5G07310; Rap2.6L; AT5G61890 | Not Available | | 75.20% |
Matrix_385 | DEAR4 | Not Available | | 74.82% |
Matrix_426 | CRF1; CRF2 | Not Available | | 74.40% |
Motif_402 | AtTINY2 | Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana | | 72.79% |
Matrix_378 | ATERF1 | Not Available | | 72.56% |
Matrix_454 | AT1G77200; ATERF38; AT4G16750; AT5G52020 | Not Available | | 72.49% |
Matrix_433 | ATERF1 | Not Available | | 72.38% |
Matrix_45 | DRN | Not Available | | 72.37% |
Matrix_147 | ERF3; AT1G80580 | Not Available | | 72.35% |
Matrix_506 | DRNL; ATERF-4 | Not Available | | 72.21% |
Matrix_272 | DEAR4 | Not Available | | 72.18% |
Matrix_61 | ATCBF3 | Not Available | | 72.08% |
Matrix_146 | ORA47 | Not Available | | 71.66% |
Matrix_394 | DREB_U | Not Available | | 71.32% |
Matrix_234 | RAP2.3 | Not Available | | 71.27% |
Motif_50 | AtERF-7; AtERF-4; AtERF-3; AtERF-1; AtERF-2; AtERF-5 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses | | 70.99% |
Matrix_295 | ERF1 | Not Available | | 70.81% |
Motif_60 | AtERF-4; AtERF-3 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 70.77% |
Matrix_252 | RAP2.6 | Not Available | | 70.20% |
Matrix_484 | ATERF13 | Not Available | | 69.81% |
Matrix_92 | AT1G33760 | Not Available | | 68.97% |
Matrix_261 | ATERF-1 | Not Available | | 68.78% |
Matrix_517 | ERF12 | Not Available | | 68.73% |
Matrix_91 | CRF3 | Not Available | | 68.60% |
Matrix_493 | AT1G22985; AT1G71130 | Not Available | | 68.49% |
Motif_509 | AtTINY2 | Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana | | 67.82% |
Matrix_343 | AT2G33710 | Not Available | | 67.45% |
Matrix_360 | ORA59 | Not Available | | 66.59% |
Motif_457 | AtERF-4; AtERF-3; AtERF-1; AtERF-2; AtERF-5 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 66.30% |
Matrix_321 | HRD | Not Available | | 65.51% |
Matrix_395 | AT1G19210; ORA47; AT4G31060; AT5G21960 | Not Available | | 64.69% |
Matrix_377 | AT1G75490; DREB2C; AT2G40350; AT5G18450 | Not Available | | 64.61% |
Motif_37 | AtERF-4 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 64.41% |
Motif_625 | AtERF-4; AtERF-3 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 64.10% |
Motif_219 | E2Fa | The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants | | 64.01% |
Matrix_462 | ATERF-8 | Not Available | | 63.74% |
Motif_444 | OCTAMOTIF2 | Octamer motif found in histone-gene-specific consensus sequences; 200 base upstream from the initiation codon ATG; Exist in all of seven plant histone genes | | 63.23% |
Matrix_456 | bZIP60 | Not Available | | 63.01% |
Matrix_5 | AT5G51190; ERF104 | Not Available | | 62.94% |
Matrix_387 | ORA47 | Not Available | | 62.69% |
Matrix_260 | CAMTA3 | Not Available | | 62.06% |
Matrix_169 | E2F1 | Not Available | | 61.65% |
Motif_374 | HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression | | 61.52% |
Matrix_282 | bZIP60 | Not Available | | 61.51% |
Motif_191 | AtERF-4; AtERF-3 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 61.40% |
Matrix_334 | AT3G23230 | Not Available | | 61.33% |
Matrix_406 | ATERF-7 | Not Available | | 61.25% |
Motif_144 | DREB2A; DREB1A | Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses | | 61.04% |
Matrix_482 | AT2G25650; AT4G00270 | Not Available | | 60.92% |
Matrix_154 | AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130 | Not Available | | 60.88% |
Matrix_292 | FTQ4 | Not Available | | 60.71% |
Matrix_420 | ANAC58 | Not Available | | 60.48% |
Matrix_190 | ATERF1 | Not Available | | 59.79% |
Matrix_228 | TGA2 | Not Available | | 59.65% |
Matrix_23 | ANAC46 | Not Available | | 59.64% |
Matrix_374 | AT5G07580; AT5G61590 | Not Available | | 58.99% |
Matrix_151 | ASIL1 | Not Available | | 58.98% |
Matrix_253 | ETT | Not Available | | 58.83% |
Motif_99 | DREB1A; DREB1C; DREB1B | Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression;Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit | | 58.76% |
Matrix_373 | E2FE | Not Available | | 58.75% |
Motif_89 | AtTINY2 | Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana | | 58.27% |
Motif_385 | GGTCCCATGMSAUR | Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter; Involved in auxin responsiveness | | 58.13% |
Motif_394 | AtTINY2 | Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana | | 57.99% |
Motif_32 | DREB2A; DREB1A; AtTINY2; DREB1C; DREB1B | Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana. Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems.Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression.Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit.Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses | | 57.98% |
Motif_393 | AUXREPSIAA4 | AuxRE (Auxine responsive element ) of pea PS-IAA4/5 gene; Indoleacetic acid-inducible genes; domain A; TGA1a is preferentially expressed in root tip meristems; TGA1a may contribute to the expression of GST isoenzymes, especially in root tip meristems | | 57.76% |
Matrix_475 | AT5G64220 | Not Available | | 57.38% |
Matrix_242 | AT2G25820; AT3G16280; AT4G32800; TINY2; tny | Not Available | | 57.34% |
Motif_320 | AGCBOXNPGLB | AGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC box | | 57.32% |
Matrix_344 | ATERF15; AT4G18450 | Not Available | | 57.25% |
Matrix_59 | AT4G00238; AT4G00250 | Not Available | | 57.04% |
Motif_680 | HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression | | 57.01% |
Motif_128 | HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression | | 56.95% |
Motif_435 | E2FBNTRNR | E2Fb found in the tobacco RNR (Ribonucleotide reductase) gene promoter; Binding site of tobacco E2F; Involved in upregulation of the promoter at G1/S transition; dE2F (distal reverse E2F element) important for regulating specific RNR1a gene expression in respsonse to UV-C irradiation | | 56.92% |
Matrix_196 | TCP20; AT5G41030 | Not Available | | 56.82% |
Motif_203 | bZIP23; bZIP19 | Arabidopsis thaliana transcription factors bZIP19 and bZIP23 regulate the adaptation to zinc deficiency | | 56.65% |
Matrix_40 | TCP2 | Not Available | | 56.60% |
Motif_620 | DREB1&2 BS in rd29a | Related to responsiveness to drought, low-temperature or high-salt stress; Binding site of DREB1 and DREB2: Binding site of Arabidopsis CBF1(C-repeat/DRE binding factor); Overexpression of DREB1A activated the expression of stress tolerance genes; CBF1 overexpression induces COR genes and enhances freezing tolerance; Heterologous CBF1 expression enhances oxidative stresses tolerance; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis;Improving plant drought, salt, and freezing tolerance by gene transfer of a single stress-inducible transcription factor | | 56.38% |
Matrix_73 | DEAR3; RAP2.9; RAP2.10 | Not Available | | 56.35% |
Matrix_492 | ETT | Not Available | | 56.29% |
Motif_602 | E2Fc; E2Fd | The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants | | 56.18% |
Motif_265 | GCAACREPEATZMZEIN | GCAAC repeat found in the 22bp recognition site for beta-1 factor in the promoter of beta-zein (prolamin type) gene of maize; GCAAC is the core recognition sequence of the protein encoded by the retroviral oncogene myb | | 56.16% |
Matrix_393 | REM1 | Not Available | | 56.00% |
Matrix_287 | ERF2 | Not Available | | 55.97% |
Motif_97 | E2Fc; E2Fd | The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants | | 55.97% |
Matrix_515 | ddf2; ATCBF3; CBF1; CBF4 | Not Available | | 55.82% |
Matrix_478 | AT1G01250 | Not Available | | 55.81% |
Matrix_171 | LBD3; LBD4 | Not Available | | 55.78% |
Motif_405 | DREB2A; DREB1A | Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems. Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses | | 55.62% |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | | 55.49% |
Matrix_170 | AT5G47660 | Not Available | | 55.28% |
Motif_544 | CACGCAATGMGH3 | Sequence found in D4 element in Soybean GH3 gene promoter; Showed constitutive activity with TGTCTC element; Confers auxin inducibility; Binding site of nuclear protein | | 55.05% |
Matrix_130 | TCP16 | Not Available | | 54.85% |
Matrix_405 | DREB2C | Not Available | | 54.34% |
Motif_94 | UP1ATMSD | Up1 motif found in 162 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis | | 54.24% |
Matrix_348 | AT5G51910 | Not Available | | 54.20% |
Matrix_144 | AT5G08330; AT5G23280 | Not Available | | 54.11% |
Matrix_450 | SPL7 | Not Available | | 53.73% |
Motif_127 | SBOXATRBCS | S-box conserved in several rbcS promoters in Arabidopsis; ABI4 binding site; Important for the sugar and ABA responsiveness of CMA5 | | 53.69% |
Matrix_139 | OBF5 | Not Available | | 53.49% |
Matrix_293 | WRKY38 | Not Available | | 53.39% |
Matrix_329 | WRKY12 | Not Available | | 53.28% |
Motif_684 | MNF1ZMPPC1 | MNF1 binding site in maize Ppc1 (phosphoenolpyruvate carboxylase) gene promoter; Involved in light induction | | 53.10% |
Matrix_376 | WRKY45 | Not Available | | 53.05% |
Matrix_101 | ERF5 | Not Available | | 52.76% |
Matrix_42 | AT2G45680 | Not Available | | 52.73% |
Matrix_20 | ANAC030; NST1; NAC066 | Not Available | | 52.42% |
Matrix_193 | RAV1 | Not Available | | 52.30% |
Matrix_265 | NGA3 | Not Available | | 52.30% |
Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | | 52.12% |
Matrix_155 | RAP2.6; ERF110; ABR1 | Not Available | | 52.11% |
Matrix_316 | WRKY15; WRKY39; WRKY7; WRKY74 | Not Available | | 52.05% |
Motif_368 | CBF1 BS in cor15a | Determinants in the sequence specific binding of two plant transcription factors, CBF1 and NtERF2, to the DRE and GCC motifs | | 51.63% |
Matrix_500 | WRKY43 | Not Available | | 51.62% |
Motif_177 | -300MOTIFZMZEIN | Motif in -300 elements of alpha-zein genes of maize; homologous to the sequence to which transacting factors of AP-1, fos, jun or yeast hisS bind | | 51.56% |
Matrix_281 | TCP13 | Not Available | | 51.50% |
Matrix_110 | ATABI4; AT3G57600 | Not Available | | 51.47% |
Motif_621 | bZIP23; bZIP19 | Arabidopsis thaliana transcription factors bZIP19 and bZIP23 regulate the adaptation to zinc deficiency | | 51.28% |
Matrix_116 | ANAC55 | Not Available | | 51.26% |
Matrix_26 | ATMYB3; MYB24 | Not Available | | 51.13% |
Matrix_273 | ANAC55 | Not Available | | 51.09% |
Motif_2 | ACGTSEED2 | ACGT motif related to seed expression; Gene: French bean phaseolin; transacting factor: 02 | | 50.99% |
Motif_107 | O2F2BE2S1 | opaque-2 recognition site F2 in Bertholletia excelsa (Brazil nut tree) 2S storage protein gene (be2S1); O2 protein binds to F1, F2 and F3 sequences of be2S1 promoter; F2 is a new O2-binding sequence related to the O2 target sites of the Coix alpha-coxin, the maize b-32 genes and the AP-1 pseudopalindrome | | 50.87% |
Motif_371 | DRE-like promoter motif | The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses | | 50.83% |
Matrix_297 | TCP15 | Not Available | | 50.81% |
Matrix_243 | RAP2.12; RAP2.2 | Not Available | | 50.77% |
Matrix_186 | FHY3 | Not Available | | 50.54% |
Matrix_314 | WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52 | Not Available | | 50.51% |
Motif_67 | LS5ATPR1 | LS5; A negative regulatory element found in the Arabidopsis PR-1 gene promoter; Binding site of TGA2; NPR1 increased the binding of TGA2 to the element; NPR1 is essential in activating systemic, inducible plant defense response; TGA6 expressed in roots in young seedlings; TGA2.1 is a direct transcriptional activator; TGA2.2 stabilizes TGA2.1 binding; The Arabidopsis NPR1/NIM1 protein enhances the DNA binding activity of a subgroup of the TGA family of bZIP transcription factors | | 50.50% |
Matrix_259 | AT1G50680; AT1G51120 | Not Available | | 50.48% |
Matrix_509 | LEC2 | Not Available | | 50.45% |
Matrix_446 | LBD16 | Not Available | | 50.39% |
Motif_399 | UPRMOTIFIAT | Motif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc. | | 50.38% |
Motif_379 | ABRECE1HVA22 | CE1(coupling element 1) of barley HVA22 gene; possible binding site for nuclear bZIP protein; ABA responsive complex consists of a G-box, namely ABRE3 (GCCACGTACA), and CE1 | | 50.34% |
Matrix_230 | ARR11 | Not Available | | 50.33% |
Matrix_312 | ARF11; MP; ARF6; IAA21; ARF8; ARF4 | Not Available | | 50.21% |
Matrix_187 | CDC5 | Not Available | | 50.08% |
Matrix_349 | CDC5 | Not Available | | 50.08% |