PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_136
Name: SEP3
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_181	Dof5.7	Not Available	67.45%
Matrix_501	DAG2	Not Available	65.88%
Motif_198	CARGATCONSENSUS	CArG consensus sequence found in the promoter of Arabidopsis SOC1 which is the MADS-box flowering-time gene; FLC is a component of the vernalization (low-temperature) pathway binds directly to this site and blocks transcriptional activation of SOC1 by CONSTANS (CO)	65.11%
Matrix_72	CDF2	Not Available	64.84%
Matrix_227	AT1G64620	Not Available	62.19%
Matrix_149	PI	Not Available	59.75%
Matrix_13	HAT5	Not Available	59.52%
Matrix_255	cdf3	Not Available	59.28%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	58.87%
Matrix_122	ABF1; AREB2	Not Available	58.83%
Matrix_143	GATA14; GATA6; GATA5	Not Available	58.77%
Matrix_99	DOF4.7	Not Available	58.69%
Matrix_259	AT1G50680; AT1G51120	Not Available	58.38%
Matrix_497	AP3	Not Available	58.03%
Matrix_129	ABF1	Not Available	58.00%
Matrix_254	MYB52	Not Available	57.98%
Matrix_131	HDG12; EDT1; GL2; HDG8	Not Available	57.97%
Matrix_203	GATA9; GATA12	Not Available	57.93%
Motif_45	AGL25; SOC1	FLOWERING LOCUS C (FLC) regulates development pathways throughout the life cycle of Arabidopsis;Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	57.80%
Matrix_407	AP1	Not Available	57.77%
Matrix_495	HD-GL2-1; ANL2	Not Available	57.71%
Matrix_88	AHL12	Not Available	57.24%
Motif_47	CARGNCAT	Noncanonical CArG motif (CC-Wx8-GG) found in the promoter region of DTA1 (AtGA2ox6); A relevant cis element for the response to AGL15 (AGAMOUS-like 15) in vivo	57.22%
Matrix_132	SOC1	Not Available	57.21%
Motif_677	AGL22; AGL20; AGL24	Regulation of floral patterning by flowering time genes	57.10%
Matrix_236	CCA1	Not Available	56.97%
Matrix_212	ATHB-12	Not Available	56.96%
Matrix_435	ATHB51	Not Available	56.72%
Matrix_97	APRR2	Not Available	56.70%
Matrix_341	HMGA	Not Available	56.37%
Motif_235	C8GCARGAT	Binding site of plant MADS-domain protein AGL15; CArG motif with a longer A/T-rich core;A variant of CArG motif, with a longer A/T-rich core; Binding site for AGL15 (AGAMOUS-like 15)	56.35%
Matrix_412	GL1	Not Available	56.21%
Matrix_141	AT3G25990	Not Available	56.17%
Matrix_411	DOF5.6	Not Available	56.08%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	56.04%
Matrix_333	GATA3	Not Available	56.03%
Matrix_416	ASL5	Not Available	56.02%
Matrix_46	AT4G21895	Not Available	55.71%
Matrix_308	INO	Not Available	55.61%
Matrix_125	AHL12	Not Available	55.50%
Matrix_185	AHL25	Not Available	55.41%
Matrix_286	GATA7	Not Available	55.31%
Matrix_204	WOX13	Not Available	55.11%
Matrix_521	AHL20	Not Available	55.05%
Motif_449	AGL25; SVP	FLOWERING LOCUS C (FLC) regulates development pathways throughout the life cycle of Arabidopsis. Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	55.01%
Matrix_177	ADOF2	Not Available	54.88%
Matrix_74	LFY	Not Available	54.73%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	54.53%
Matrix_440	LFY	Not Available	54.25%
Matrix_226	GATA1	Not Available	54.15%
Matrix_452	MYB46	Not Available	54.07%
Matrix_444	AT1G19485; AT4G17950	Not Available	54.07%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	53.84%
Motif_87	AGL22; AGL20; AGL24	Regulation of floral patterning by flowering time genes	53.79%
Matrix_70	GATA26	Not Available	53.78%
Matrix_328	AT1G76580	Not Available	53.72%
Matrix_447	RVE1	Not Available	53.70%
Matrix_441	ATHB5	Not Available	53.69%
Matrix_463	HAT3.1	Not Available	53.62%
Matrix_93	YAB5	Not Available	53.49%
Matrix_25	AP3	Not Available	53.41%
Matrix_247	PIF3	Not Available	53.40%
Matrix_81	YAB1	Not Available	53.39%
Matrix_120	BEE2	Not Available	53.25%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	53.05%
Matrix_54	AHL20	Not Available	52.95%
Matrix_354	AHL12	Not Available	52.95%
Matrix_480	BES1	Not Available	52.76%
Matrix_80	BIM1	Not Available	52.73%
Matrix_18	AP3	Not Available	52.73%
Motif_568	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	52.68%
Matrix_195	GATA2; GATA4	Not Available	52.61%
Matrix_67	GLK1	Not Available	52.55%
Matrix_168	AHL25	Not Available	52.49%
Matrix_174	ZAT2	Not Available	52.46%
Matrix_502	AT3G13040	Not Available	52.40%
Matrix_491	AT1G68670; AT3G25790	Not Available	52.24%
Motif_9	RBENTGA3	rbe (RSG binding element) found in the tobacco GA3 gene promoter; Binding site of RSG (Repression of shoot growth); RSG is a bZIP transcriptional activator; RSG regulates the morphology of plants by controlling the endogenous amounts of GAs	52.19%
Matrix_408	GATA12	Not Available	52.12%
Matrix_465	MYC4	Not Available	52.11%
Matrix_12	EIN3; EIL2	Not Available	52.05%
Matrix_464	AGL15; AGL71	Not Available	52.00%
Matrix_327	ARR11	Not Available	51.94%
Matrix_350	ARR14	Not Available	51.86%
Matrix_160	RVE1	Not Available	51.71%
Matrix_332	SPT; ALC	Not Available	51.70%
Matrix_230	ARR11	Not Available	51.68%
Matrix_404	OBP4	Not Available	51.66%
Matrix_32	AHL25	Not Available	51.64%
Matrix_519	ATDOF2.4	Not Available	51.58%
Matrix_431	ATHB21; HB-3	Not Available	51.57%
Matrix_26	ATMYB3; MYB24	Not Available	51.53%
Matrix_461	ATHB12	Not Available	51.51%
Motif_477	MYB1; MYB2	An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence;Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen	51.41%
Matrix_330	MYC2; TT8	Not Available	51.33%
Matrix_208	AP1	Not Available	51.29%
Motif_188	CDA1ATCAB2	CDA-1 (CAB2 DET1-associated factor 1) binding site in DtRE (dark response element) f of chlorophyll a/b-binding protein2 (CAB2) gene in Arabidopsis	51.23%
Matrix_109	GBF3	Not Available	51.23%
Matrix_184	AGL15	Not Available	51.21%
Matrix_418	KNAT6; KNAT2	Not Available	51.21%
Matrix_393	REM1	Not Available	51.16%
Matrix_451	STY1	Not Available	51.12%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	51.12%
Matrix_69	AT2G03500	Not Available	51.10%
Matrix_389	ILR3	Not Available	50.96%
Matrix_56	BZIP17; BZIP28; BZIP49	Not Available	50.95%
Matrix_142	ZFP8	Not Available	50.92%
Matrix_483	ICU4	Not Available	50.88%
Matrix_383	CCA1	Not Available	50.87%
Matrix_182	ATHB6	Not Available	50.83%
Matrix_8	KAN1	Not Available	50.77%
Matrix_167	ZAT6	Not Available	50.72%
Matrix_53	MYC3	Not Available	50.63%
Motif_83	CIACADIANLELHC	Region necessary for circadian expression of tomato Lhc gene	50.55%
Motif_373	TATABOX1	TATA box; TATA box found in the 5'upstream region of rice alpha-amylase; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation	50.54%
Matrix_36	RAV1_1	RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	50.52%
Matrix_78	AT3G45610	Not Available	50.46%
Matrix_494	OBP4	Not Available	50.40%
Matrix_17	WRKY22	Not Available	50.33%
Matrix_158	AT1G03040; LRL1; UNE12; LRL2; LRL3	Not Available	50.29%
Matrix_271	AT3G16350	Not Available	50.20%
Matrix_71	ATHB7	Not Available	50.19%
Motif_143	VND6	Arabidopsis VASCULAR-RELATED NAC-DOMAIN6 directly regulates the genes that govern programmed cell death and secondary wall formation during xylem differentiation	50.17%
Matrix_322	NST3; ANAC015; BRN2	Not Available	50.03%