PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_135
Name: ABI3
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_79	FUS3	Not Available	84.64%
Matrix_509	LEC2	Not Available	75.54%
Matrix_66	AtLEC2	Genes directly regulated by LEAFY COTYLEDON2 provide insight into the control of embryo maturation and somatic embryogenesis	71.22%
Motif_518	SPHCOREZMC1	Core of Sph element; Core motif of Sph element in maize C1 gene to which maize VP1 (viviparous 1) protein binds; VP1-responsive element; see RYREPEAT4; VP1 gene is specifically required for expression of the maturation program in seed development; VP1 is a novel transcription factor possibly involved in potentiation of a seed-specific hormone response	69.84%
Matrix_296	GBF2	Not Available	65.06%
Matrix_300	bZIP68; bZIP16	Not Available	64.24%
Motif_22	RYREPEATLEGUMINBOX	RY repeat (CATGCAY) or legumin box found in seed-storage protein genes in legume such as soybean	64.04%
Matrix_218	TIFY2B; TIFY1	Not Available	63.49%
Matrix_352	LEC2	Not Available	62.92%
Matrix_360	ORA59	Not Available	62.27%
Matrix_505	GATA8	Not Available	62.12%
Motif_511	RYREPEATGMGY2	RY repeat motif (CATGCAT); Present in the 5' region of the soybean glycinin gene (Gy2)	61.99%
Matrix_420	ANAC58	Not Available	60.91%
Matrix_155	RAP2.6; ERF110; ABR1	Not Available	60.78%
Matrix_433	ATERF1	Not Available	60.08%
Motif_640	RYREPEATBNNAPA	RY repeat found in RY/G box (the complex containing the two RY repeats and the G-box) of napA gene in Brassica napus; Found between -78 and -50; Required for seed specific expression;dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABRE	59.88%
Matrix_37	GATA27	Not Available	59.58%
Matrix_307	RGL2; RGL3	Not Available	59.24%
Matrix_38	SPL14	Not Available	59.23%
Matrix_295	ERF1	Not Available	59.13%
Matrix_45	DRN	Not Available	58.83%
Matrix_484	ATERF13	Not Available	58.80%
Matrix_188	SPL4	Not Available	58.21%
Motif_310	ANAERO3CONSENSUS	One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO3CONSENSUS by the PLACEdb curator	58.00%
Matrix_221	SPL7	Not Available	57.85%
Matrix_331	GBF1	Not Available	57.56%
Matrix_139	OBF5	Not Available	57.00%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	56.84%
Motif_248	L1-box	Arabidopsis DELLA and two HD-ZIP transcription factors regulate GA signaling in the epidermis through the L1 box cis-element	56.76%
Matrix_109	GBF3	Not Available	56.58%
Matrix_448	ATERF6	Not Available	56.56%
Matrix_147	ERF3; AT1G80580	Not Available	56.52%
Matrix_7	PIF4	Not Available	56.34%
Motif_383	UPRE-III(bZIP60)	The plant-specific transcription factor NAC103 is induced by bZIP60 through a new cis-regulatory element to modulate the unfolded protein response in Arabidopsis	56.10%
Motif_263	RYREPEATVFLEB4; ABI3	RY repeat motif; quantitative seed expression; Gene: Vicia faba LeB4; Soybean glycinin (Gy2); other dicot and monocot seed protein genes; Sph box found in rice Osem gene promoter; Binding site of Arabidopsis B3-domain-containing transcription factor FUS3; TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption; FUS3 protein physically interact with two RY elements present in the AtGA3ox promoter;RY repeats are conserved in the 5 prime-flanking region of legume seed protein genes. Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	56.08%
Motif_653	INTRONLOWER	3' intron-exon splice junctions; Plant intron lower sequence; Consensus sequence for plant introns	55.89%
Matrix_395	AT1G19210; ORA47; AT4G31060; AT5G21960	Not Available	55.87%
Matrix_5	AT5G51190; ERF104	Not Available	55.81%
Matrix_456	bZIP60	Not Available	55.61%
Motif_222	AGMOTIFNTMYB2	AG-motif found at -114 of the promoter of NtMyb2 gene; NtMyb2 is a regulator of the tobacco retrotransposon Tto1 and the defence-related gene phenylalanine ammonia lyase (PAL), which are induced by various stress such as wounding or elicitor treatment; AGP1 (GATA-type zinc finger protein) binding site	55.44%
Motif_309	GATA promoter motif	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	55.44%
Motif_437	ANAERO2CONSENSUS	One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1)	55.44%
Matrix_502	AT3G13040	Not Available	55.42%
Matrix_80	BIM1	Not Available	55.42%
Matrix_449	BIM2	Not Available	55.03%
Matrix_14	ZCW32; AT5G62610	Not Available	54.72%
Matrix_6	AT1G70000	Not Available	54.71%
Matrix_137	SPL1; SPL12	Not Available	54.65%
Motif_167	SBP-box promoter motif	Molecular characterisation of the Arabidopsis SBP-box genes	54.61%
Motif_456	FUS3; ABI3	Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	54.59%
Motif_412	SORLREP5AT	one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and all SORLIPs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	54.53%
Matrix_323	BIM3	Not Available	54.35%
Matrix_158	AT1G03040; LRL1; UNE12; LRL2; LRL3	Not Available	54.34%
Matrix_255	cdf3	Not Available	54.31%
Matrix_200	PIL5; AT4G28790; AT4G28800; AT4G28811; AT4G28815	Not Available	54.24%
Motif_238	AtWER	Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis	53.83%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	53.80%
Matrix_120	BEE2	Not Available	53.77%
Matrix_369	AT2G18300	Not Available	53.73%
Matrix_330	MYC2; TT8	Not Available	53.69%
Matrix_23	ANAC46	Not Available	53.66%
Motif_145	MYCATERD1	MYC recognition sequence (from -466 to -461) necessary for expression of erd1 (early responsive to dehydration) in dehydrated Arabidopsis; NAC protein bound specifically to the CATGTG motif; NAC protein bound specifically to the CATGTG motif	53.60%
Matrix_333	GATA3	Not Available	53.56%
Motif_580	L1BOXATPDF1	L1 box found in promoter of Arabidopsis thaliana PROTODERMAL FACTOR1 (PDF1) gene; Located between -134 and -127; Involved in L1 layer-specific expression; L1-specific homeodomain protein ATML can bind to the L1 box; Y=C/T; A cotton fiber gene, RD22-like 1 (RDL1), contains a homeodomain binding L1 box and a MYB binding motif ; HDZip IV; Identification of a cis-regulatory element for L1 layer-specific gene expression, which is targeted by an L1-specific homeodomain protein	53.48%
Matrix_465	MYC4	Not Available	53.48%
Motif_552	MRE1	MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1	53.40%
Matrix_517	ERF12	Not Available	53.29%
Matrix_336	AT5G08520	Not Available	53.19%
Motif_490	PROLAMINBOXOSGLUB1	Prolamine box found in the rice GluB-1 gene promoter; Involved in quantitative regulation of the GluB-1 gene	53.12%
Motif_444	OCTAMOTIF2	Octamer motif found in histone-gene-specific consensus sequences; 200 base upstream from the initiation codon ATG; Exist in all of seven plant histone genes	53.11%
Matrix_374	AT5G07580; AT5G61590	Not Available	53.10%
Matrix_46	AT4G21895	Not Available	53.03%
Matrix_252	RAP2.6	Not Available	52.92%
Matrix_226	GATA1	Not Available	52.89%
Matrix_271	AT3G16350	Not Available	52.86%
Matrix_230	ARR11	Not Available	52.83%
Matrix_344	ATERF15; AT4G18450	Not Available	52.57%
Matrix_195	GATA2; GATA4	Not Available	52.46%
Matrix_379	RHL41	Not Available	52.39%
Motif_301	SPHZMC1	Sph element found in the maize C1 gene promoter; Located between -142 and -132; Essential for VP1 activation; VP1 gene is specifically required for expression of the maturation program in seed development; VP1 is a novel transcription factor possibly involved in potentiation of a seed-specific hormone response	52.34%
Matrix_106	AT5G47390	Not Available	52.30%
Motif_119	ABI3	Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	52.29%
Motif_244	ABRE-like binding site motif	Not Available	52.26%
Matrix_258	WOX13	Not Available	52.25%
Matrix_503	AT2G37430; AT3G53600	Not Available	52.01%
Matrix_233	MYC3	Not Available	51.94%
Matrix_339	bHLH104	Not Available	51.93%
Matrix_389	ILR3	Not Available	51.91%
Motif_584	UPRE-III(bZIP60)	The plant-specific transcription factor NAC103 is induced by bZIP60 through a new cis-regulatory element to modulate the unfolded protein response in Arabidopsis	51.89%
Matrix_164	AT1G02030; AT2G45120; AZF2; AT3G60580	Not Available	51.87%
Matrix_436	AT3G49930; AZF1	Not Available	51.69%
Matrix_156	POC1	Not Available	51.58%
Matrix_512	HAT3	Not Available	51.56%
Matrix_408	GATA12	Not Available	51.51%
Matrix_437	MYC2	Not Available	51.50%
Matrix_493	AT1G22985; AT1G71130	Not Available	51.47%
Matrix_193	RAV1	Not Available	51.34%
Matrix_265	NGA3	Not Available	51.34%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	51.28%
Matrix_60	AT1G01260; AT5G57150	Not Available	51.24%
Matrix_78	AT3G45610	Not Available	51.20%
Matrix_425	TIFY2A	Not Available	51.13%
Matrix_518	AT2G21230	Not Available	51.09%
Motif_495	TRANSINITMONOCOTS	Context sequence of translational initiation codon in monocots	50.98%
Matrix_198	STZ; C2H2; AZF3	Not Available	50.97%
Matrix_50	ATERF14; AT5G43410	Not Available	50.93%
Motif_191	AtERF-4; AtERF-3	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	50.88%
Motif_414	ABI3	Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	50.88%
Matrix_272	DEAR4	Not Available	50.88%
Motif_675	FUS3; ABI3	Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	50.80%
Matrix_53	MYC3	Not Available	50.76%
Matrix_90	BEE1; BEE3; AT3G07340; AT5G48560; AT5G50915	Not Available	50.60%
Matrix_473	RRTF1	Not Available	50.60%
Matrix_146	ORA47	Not Available	50.55%
Matrix_490	AtMYB77; ATMYB44	Not Available	50.50%
Matrix_227	AT1G64620	Not Available	50.39%
Matrix_64	PIF5	Not Available	50.29%
Matrix_58	WRKY55; ATWRKY54; WRKY46; WRKY70; AtWRKY41; WRKY53; WRKY30	Not Available	50.27%
Matrix_350	ARR14	Not Available	50.23%
Matrix_476	bHLH115; bHLH34	Not Available	50.22%
Matrix_126	RBE	Not Available	50.12%
Matrix_504	WRKY40	Not Available	50.03%