PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_132
Name: SOC1
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Motif_45	AGL25; SOC1	FLOWERING LOCUS C (FLC) regulates development pathways throughout the life cycle of Arabidopsis;Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	75.32%
Matrix_25	AP3	Not Available	69.32%
Matrix_412	GL1	Not Available	69.22%
Matrix_72	CDF2	Not Available	67.81%
Motif_449	AGL25; SVP	FLOWERING LOCUS C (FLC) regulates development pathways throughout the life cycle of Arabidopsis. Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	66.99%
Matrix_407	AP1	Not Available	66.02%
Matrix_184	AGL15	Not Available	65.92%
Matrix_149	PI	Not Available	63.31%
Matrix_501	DAG2	Not Available	62.40%
Matrix_89	SOC1	Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	61.47%
Matrix_208	AP1	Not Available	61.27%
Matrix_227	AT1G64620	Not Available	61.14%
Matrix_136	SEP3	Not Available	60.77%
Matrix_255	cdf3	Not Available	59.98%
Matrix_181	Dof5.7	Not Available	59.71%
Motif_44	AGL25	FLOWERING LOCUS C (FLC) regulates development pathways throughout the life cycle of Arabidopsis	58.65%
Motif_153	MARABOX1	A-box found in SAR(scaffold attachment region; or matrix attachment region, MAR)	58.47%
Matrix_74	LFY	Not Available	58.20%
Matrix_13	HAT5	Not Available	58.08%
Motif_660	GT-3b	Pathogen- and NaCl-induced expression of the SCaM-4 promoter is mediated in part by a GT-1 box that interacts with a GT-1-like transcription factor	58.07%
Matrix_364	FLC	Not Available	58.02%
Motif_549	TBF1	The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transition	57.77%
Matrix_404	OBP4	Not Available	57.05%
Matrix_262	ATGRP2B; CSDP2	Not Available	55.98%
Motif_476	XYLAT	cis-element identified among the promoters of the core xylem gene set	55.44%
Motif_143	VND6	Arabidopsis VASCULAR-RELATED NAC-DOMAIN6 directly regulates the genes that govern programmed cell death and secondary wall formation during xylem differentiation	55.36%
Matrix_497	AP3	Not Available	55.11%
Matrix_36	RAV1_1	RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	54.55%
Motif_588	TL1ATSAR	TL1, a consensus sequence overrepresented in the promoter regions of all 13 NPR1-responsive ER-resident genes surveyed; NPR1 is Nonexpressor of pathogenesis-related genes 1, also known as NIM1	53.94%
Motif_93	RGATAOS	R-GATA (GATA motif binding factor) binding site; GATA motif is found at -143 to -135 of RTBV promoter; GATA motif is required for phloem-specific gene expression of Rice Tungro Bacilliform Virus (RTBV); See also RNFG1OS, RNFG2OS, and ABFOS	53.80%
Motif_283	TRANSTART	plant consensus sequence for translation start site	53.77%
Matrix_396	AP3	Not Available	53.66%
Matrix_54	AHL20	Not Available	53.64%
Matrix_254	MYB52	Not Available	53.30%
Motif_257	BOX1PSGS2	Box 1 element in pea glutamine synthetase (GS2) gene; An element in a 33-bp AT-rich sequence (box 1) of the 5' end of a GS2 promoter; Located at -837 to -827 of pea GS2; Multimer of box 1 element was used to isolate a cDNA encoding an AT-rich DNA binding protein (ATBP-1)	53.16%
Matrix_464	AGL15; AGL71	Not Available	53.14%
Matrix_411	DOF5.6	Not Available	52.94%
Matrix_494	OBP4	Not Available	52.72%
Matrix_420	ANAC58	Not Available	52.58%
Motif_387	AG BS in SPL/NOZ	The homeotic protein AGAMOUS controls microsporogenesis by regulation of SPOROCYTELESS	52.37%
Motif_76	SURE1STPAT21	Sucrose Responsive Element (SURE); A motif conserved among genes regulated by sucrose; See also SURE2STPAT21; Found between -184 and -156 bp in the patatin (a major tuber protein) gene promoter of potato	52.30%
Matrix_18	AP3	Not Available	52.18%
Motif_315	AtSR1	A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants	52.16%
Matrix_81	YAB1	Not Available	51.81%
Matrix_51	LFY	Not Available	51.53%
Matrix_99	DOF4.7	Not Available	51.50%
Matrix_66	AtLEC2	Genes directly regulated by LEAFY COTYLEDON2 provide insight into the control of embryo maturation and somatic embryogenesis	51.33%
Matrix_306	TGA1	TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG	51.32%
Matrix_116	ANAC55	Not Available	51.22%
Matrix_20	ANAC030; NST1; NAC066	Not Available	51.09%
Matrix_22	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	51.09%
Matrix_213	ATHB22	Not Available	51.03%
Matrix_523	FUSCA3	Not Available	50.98%
Motif_677	AGL22; AGL20; AGL24	Regulation of floral patterning by flowering time genes	50.79%
Matrix_309	FLC	Not Available	50.64%
Matrix_124	AtHB23; ATHB13; ATHB20; ATHB5	Not Available	50.48%
Matrix_341	HMGA	Not Available	50.43%
Matrix_204	WOX13	Not Available	50.41%
Motif_373	TATABOX1	TATA box; TATA box found in the 5'upstream region of rice alpha-amylase; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation	50.33%
Motif_420	SORLREP2AT	one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and all SORLIPs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	50.27%
Matrix_205	AGL15	Not Available	50.27%
Matrix_131	HDG12; EDT1; GL2; HDG8	Not Available	50.17%
Matrix_327	ARR11	Not Available	50.13%
Matrix_236	CCA1	Not Available	50.12%
Matrix_168	AHL25	Not Available	50.03%