PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_13
Name: HAT5
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_353	HAT5	Not Available	81.34%
Matrix_495	HD-GL2-1; ANL2	Not Available	73.61%
Motif_87	AGL22; AGL20; AGL24	Regulation of floral patterning by flowering time genes	70.80%
Matrix_435	ATHB51	Not Available	70.74%
Matrix_441	ATHB5	Not Available	67.47%
Matrix_124	AtHB23; ATHB13; ATHB20; ATHB5	Not Available	66.63%
Matrix_483	ICU4	Not Available	66.61%
Motif_277	ATHB1 binding site motif	Recognition sequence of Arabidopsis Athb-1 protein; Athb-1 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); HD-Zip domain binds to DNA as a dimer; The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	65.92%
Motif_352	ATHB5 binding site motif	Consensus binding sequence for Arabidopsis class I HDzip (Homeodomein-leucine zipper) protein, ATHB5; ATHB5 protein forms dimers in solution; ATHB5 and ATHB6 exhibit identical DNA binding specificities; ATHB5 forms heterodimers with other class I HDzip proteins; DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro	65.69%
Motif_142	HDZIPIIIAT	Ath b-9 HD-Zip (HD-Zip-9), a member of a small family of HD-Zip proteins (HD-ZIP III), in Arabidopsis recognize this sequence	65.63%
Matrix_71	ATHB7	Not Available	65.48%
Matrix_302	HAT1; HAT2	Not Available	65.43%
Matrix_461	ATHB12	Not Available	65.22%
Matrix_62	HAT5	Not Available	64.19%
Matrix_103	ATHB1	The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	63.88%
Motif_169	ATHB2 binding site motif	Recognition sequence of Arabidopsis Athb-2 protein; Athb-2 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	63.72%
Matrix_136	SEP3	Not Available	62.89%
Matrix_204	WOX13	Not Available	62.29%
Matrix_431	ATHB21; HB-3	Not Available	62.11%
Matrix_429	KAN4	Not Available	62.08%
Motif_298	GMHDLGMVSPB	Binding site of the soybean homeodomein leucine zipper proteins (GmHdl56, GmHdl57); Found in the phosphate response domain of the soybean VspB promoter; Located between -536 and -527; VspB encodes vacuolar glycoprotein acid phosphatase that serve as vegetative storage protein	61.70%
Motif_624	ATHB6 binding site motif	Consensus binding sequence for Arabidopsis homeodomain-leucine zipper protein, ATHB6; ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses; Homeodomain protein ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses in Arabidopsis	61.54%
Matrix_81	YAB1	Not Available	61.44%
Motif_285	HDZIP2ATATHB2	Binding site of the Arabidopsis homeobox gene (ATHB-2) found in its own promoter; Located between -72 and -80; Similar to the HD-ZIP-2 binding consensus sequence; ATHB-2 is regulated by light signals which function as a negative autoregulator of its own gene	61.21%
Matrix_182	ATHB6	Not Available	60.56%
Matrix_471	KAN4	Not Available	60.36%
Matrix_93	YAB5	Not Available	60.25%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	59.71%
Matrix_89	SOC1	Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	58.74%
Matrix_29	AP1	Not Available	58.65%
Matrix_132	SOC1	Not Available	58.08%
Matrix_440	LFY	Not Available	58.07%
Matrix_318	ATHB16	Not Available	57.79%
Matrix_447	RVE1	Not Available	57.56%
Matrix_391	AHL20	Not Available	57.22%
Matrix_97	APRR2	Not Available	56.91%
Matrix_408	GATA12	Not Available	56.85%
Matrix_501	DAG2	Not Available	56.79%
Matrix_9	AT5G04760	Not Available	56.79%
Matrix_383	CCA1	Not Available	56.59%
Matrix_213	ATHB22	Not Available	56.56%
Matrix_236	CCA1	Not Available	56.56%
Motif_449	AGL25; SVP	FLOWERING LOCUS C (FLC) regulates development pathways throughout the life cycle of Arabidopsis. Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	56.52%
Motif_45	AGL25; SOC1	FLOWERING LOCUS C (FLC) regulates development pathways throughout the life cycle of Arabidopsis;Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	56.52%
Matrix_181	Dof5.7	Not Available	56.38%
Matrix_226	GATA1	Not Available	56.35%
Matrix_72	CDF2	Not Available	56.30%
Motif_153	MARABOX1	A-box found in SAR(scaffold attachment region; or matrix attachment region, MAR)	56.17%
Matrix_195	GATA2; GATA4	Not Available	56.01%
Matrix_444	AT1G19485; AT4G17950	Not Available	55.99%
Matrix_131	HDG12; EDT1; GL2; HDG8	Not Available	55.99%
Matrix_160	RVE1	Not Available	55.88%
Matrix_347	WOX14; WOX10	Not Available	55.65%
Matrix_227	AT1G64620	Not Available	55.64%
Motif_637	SARD1; CBP60g	Control of salicylic acid synthesis and systemic acquired resistance by two members of a plant-specific family of transcription factors	55.26%
Matrix_203	GATA9; GATA12	Not Available	55.26%
Matrix_88	AHL12	Not Available	55.15%
Matrix_354	AHL12	Not Available	55.14%
Matrix_494	OBP4	Not Available	55.10%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	55.10%
Matrix_178	HSFB2A	Not Available	55.03%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	54.97%
Matrix_212	ATHB-12	Not Available	54.83%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	54.78%
Matrix_8	KAN1	Not Available	54.73%
Matrix_333	GATA3	Not Available	54.71%
Matrix_308	INO	Not Available	54.69%
Matrix_143	GATA14; GATA6; GATA5	Not Available	54.65%
Matrix_286	GATA7	Not Available	54.64%
Matrix_6	AT1G70000	Not Available	54.54%
Matrix_523	FUSCA3	Not Available	54.52%
Matrix_271	AT3G16350	Not Available	54.44%
Matrix_32	AHL25	Not Available	54.28%
Matrix_491	AT1G68670; AT3G25790	Not Available	54.27%
Matrix_106	AT5G47390	Not Available	54.24%
Matrix_122	ABF1; AREB2	Not Available	54.24%
Matrix_168	AHL25	Not Available	54.11%
Matrix_51	LFY	Not Available	54.11%
Matrix_161	MYBC1; AT3G10760; LUX; AT5G05090; AT5G59570	Not Available	54.10%
Motif_147	HDMOTIFPCPR2	HD (homeodomain) protein target site in parsley pathogenesis-related protein 2 (PR2); A potential in vivo target site	54.08%
Matrix_276	AT1G01520; AT3G09600; AT4G01280; LCL1; AT5G52660	Not Available	54.05%
Matrix_205	AGL15	Not Available	53.74%
Matrix_25	AP3	Not Available	53.59%
Matrix_172	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	53.48%
Motif_345	GT-1	Molecular dissection of GT-1 from Arabidopsis	53.45%
Matrix_83	PRR5	Not Available	53.34%
Matrix_328	AT1G76580	Not Available	53.28%
Matrix_350	ARR14	Not Available	53.22%
Matrix_393	REM1	Not Available	53.20%
Matrix_246	ARR10	Molecular structure of the GARP family of plant Myb-related DNA binding motifs of the Arabidopsis response regulators	53.12%
Matrix_434	ARR11	Not Available	53.05%
Matrix_157	LHY; RVE2	Not Available	53.01%
Matrix_69	AT2G03500	Not Available	52.98%
Motif_283	TRANSTART	plant consensus sequence for translation start site	52.91%
Matrix_452	MYB46	Not Available	52.89%
Motif_9	RBENTGA3	rbe (RSG binding element) found in the tobacco GA3 gene promoter; Binding site of RSG (Repression of shoot growth); RSG is a bZIP transcriptional activator; RSG regulates the morphology of plants by controlling the endogenous amounts of GAs	52.89%
Matrix_259	AT1G50680; AT1G51120	Not Available	52.76%
Motif_297	Bellringer/replumless/pennywise BS1 IN AG	Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems	52.75%
Matrix_54	AHL20	Not Available	52.74%
Motif_373	TATABOX1	TATA box; TATA box found in the 5'upstream region of rice alpha-amylase; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation	52.73%
Matrix_255	cdf3	Not Available	52.69%
Matrix_306	TGA1	TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG	52.57%
Motif_642	SEF1MOTIF	SEF1 (soybean embryo factor 1) binding motif; sequence found in 5'-upstream region (-640; -765) of soybean beta-conglicinin (7S globulin) gene	52.50%
Matrix_366	ARR14	Not Available	52.43%
Matrix_21	HSFC1	Not Available	52.42%
Motif_581	AP1 BS in AP3	The CArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects	52.40%
Matrix_67	GLK1	Not Available	52.39%
Motif_131	P1BS	PHR1-binding sequence found in the upstream regions of phosphate starvation responsive genes from several plant species; phr1 (phosphate starvation response 1) gene codes for PHR1 protein related to PSR1 gene in C. reinhardtii	52.38%
Matrix_70	GATA26	Not Available	52.38%
Matrix_502	AT3G13040	Not Available	52.33%
Matrix_225	MYB52	Not Available	52.27%
Matrix_303	ATWOX13	Not Available	52.25%
Matrix_120	BEE2	Not Available	52.24%
Matrix_4	ARR14	Not Available	52.24%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	52.22%
Matrix_210	ARR1	Not Available	52.20%
Motif_138	RAP2.2	Transcription factor RAP2.2 and its interacting partner SINAT2: stable elements in the carotenogenesis of Arabidopsis leaves	52.17%
Matrix_159	TEM2	Not Available	52.12%
Matrix_407	AP1	Not Available	52.12%
Matrix_114	EPR1; AT3G10113	Not Available	52.06%
Matrix_361	AT1G25550	Not Available	51.85%
Matrix_357	WRKY61; WRKY6; WRKY9; WRKY36; WRKY47; WRKY42; WRKY31; WRKY72	Not Available	51.79%
Matrix_521	AHL20	Not Available	51.70%
Motif_540	CCA1 motif1 BS in CAB1	A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene	51.69%
Motif_549	TBF1	The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transition	51.68%
Matrix_499	ARR18	Not Available	51.56%
Matrix_327	ARR11	Not Available	51.55%
Matrix_185	AHL25	Not Available	51.53%
Matrix_511	AT1G05805; AT1G35460; AT1G51140; AT2G42280; AT2G43140; AT4G09180	Not Available	51.49%
Matrix_319	TEM1	Not Available	51.46%
Matrix_167	ZAT6	Not Available	51.43%
Matrix_505	GATA8	Not Available	51.37%
Matrix_254	MYB52	Not Available	51.35%
Matrix_46	AT4G21895	Not Available	51.22%
Matrix_367	REM1	Not Available	51.17%
Motif_572	AGL15 BS in AtGA2ox6	The Embryo MADS Domain Protein AGAMOUS-LIKE15 Directly Regulates Expression of a Gene Encoding an Enzyme Involved in Gibberellin Metabolism	51.08%
Motif_656	AG BS in SUP	Dimerization specificity of Arabidopsis MADS domain homeotic proteins APETALA1, APETALA3, PISTILLATA, and AGAMOUS	51.08%
Matrix_37	GATA27	Not Available	51.07%
Matrix_141	AT3G25990	Not Available	51.01%
Matrix_322	NST3; ANAC015; BRN2	Not Available	51.01%
Matrix_479	TOE1	Not Available	51.00%
Matrix_174	ZAT2	Not Available	50.92%
Matrix_230	ARR11	Not Available	50.92%
Motif_442	GT2OSPHYA	GT-2 (a rice nuclear protein) binding site in a rice phyA promoter; phyA gene are transcriptionaly repressed in response to light; One of GT elements;The HMG-1/Y protein PF1 stimulates binding of the GT-2 to PHYA gene promoter	50.90%
Motif_675	FUS3; ABI3	Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	50.89%
Motif_284	GT-2	DNA binding factor GT-2 from Arabidopsis	50.85%
Matrix_184	AGL15	Not Available	50.84%
Matrix_162	AtPHR1	Not Available	50.84%
Motif_477	MYB1; MYB2	An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence;Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen	50.80%
Matrix_421	GLK1	Not Available	50.79%
Matrix_336	AT5G08520	Not Available	50.69%
Matrix_324	AT2G01060	Not Available	50.66%
Matrix_512	HAT3	Not Available	50.55%
Matrix_265	NGA3	Not Available	50.52%
Matrix_193	RAV1	Not Available	50.52%
Motif_294	HSRENTHSR203J	HSRE(HSR203 responsive element) in tobacco responsible for the marked induction of the HSR203J gene during the HR (hypersensitive response); HSR203J is specifically activated during the early steps of incompatible plant/pathogen interactions	50.48%
Matrix_211	MYB3	Not Available	50.40%
Matrix_472	ZN_C2_H2	Not Available	50.37%
Motif_533	Bellringer/replumless/pennywise BS3 IN AG	Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems	50.33%
Matrix_87	AT1G19000	Not Available	50.25%
Matrix_129	ABF1	Not Available	50.24%
Matrix_16	AT3G04450; PHL1	Not Available	50.22%
Motif_39	CYTOSITECSHPRA	13 bp sequence of unknown function found in cucumber hydroxypyruvate reductase (hprA) gene promoter; Protein binding site; Required for cytokinin responsiveness; See AS1LIKECSHPRA found in the same region; Also involved in light responsiveness	50.21%
Matrix_262	ATGRP2B; CSDP2	Not Available	50.15%
Motif_240	IBOXLSCMCUCUMISIN	I-box-like sequence found in the region (from -254 to -215) of cucumisin (a subtilisin-like serine protease) in the fruit of melon; I-box-like sequence functions as a negative regulatory element	50.13%
Motif_91	SORLIP4AT	one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	50.13%
Matrix_392	ARR2	Not Available	50.10%
Matrix_413	RAV1	Not Available	50.07%
Matrix_298	RAV1	Not Available	50.07%
Matrix_258	WOX13	Not Available	50.05%
Motif_580	L1BOXATPDF1	L1 box found in promoter of Arabidopsis thaliana PROTODERMAL FACTOR1 (PDF1) gene; Located between -134 and -127; Involved in L1 layer-specific expression; L1-specific homeodomain protein ATML can bind to the L1 box; Y=C/T; A cotton fiber gene, RD22-like 1 (RDL1), contains a homeodomain binding L1 box and a MYB binding motif ; HDZip IV; Identification of a cis-regulatory element for L1 layer-specific gene expression, which is targeted by an L1-specific homeodomain protein	50.02%