PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_119
Name: RRTF1
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_138	RRTF1	Not Available	91.90%
Matrix_363	RAP2.3	Not Available	89.91%
Matrix_288	RAP2.3	Not Available	84.67%
Matrix_277	RAP2.6	Not Available	83.24%
Matrix_224	ERF1	Not Available	82.46%
Matrix_50	ATERF14; AT5G43410	Not Available	79.36%
Matrix_57	WIN1; SHN3; SHN2	Not Available	77.87%
Matrix_355	ERF10; ERF11	Not Available	77.63%
Matrix_326	AT5G07310; Rap2.6L; AT5G61890	Not Available	76.83%
Matrix_409	DEAR3	Not Available	76.23%
Matrix_244	DREB2C	Not Available	75.97%
Matrix_426	CRF1; CRF2	Not Available	74.93%
Matrix_448	ATERF6	Not Available	74.06%
Matrix_385	DEAR4	Not Available	73.31%
Matrix_86	CRF5; CRF6; CRF4	Not Available	73.23%
Motif_402	AtTINY2	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana	72.18%
Matrix_394	DREB_U	Not Available	71.87%
Matrix_454	AT1G77200; ATERF38; AT4G16750; AT5G52020	Not Available	71.23%
Matrix_433	ATERF1	Not Available	71.03%
Matrix_473	RRTF1	Not Available	70.97%
Matrix_506	DRNL; ATERF-4	Not Available	70.83%
Matrix_91	CRF3	Not Available	70.40%
Matrix_378	ATERF1	Not Available	70.39%
Matrix_493	AT1G22985; AT1G71130	Not Available	70.34%
Matrix_234	RAP2.3	Not Available	69.63%
Matrix_61	ATCBF3	Not Available	69.31%
Motif_50	AtERF-7; AtERF-4; AtERF-3; AtERF-1; AtERF-2; AtERF-5	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses	69.24%
Matrix_45	DRN	Not Available	69.03%
Matrix_295	ERF1	Not Available	68.95%
Matrix_147	ERF3; AT1G80580	Not Available	68.92%
Matrix_261	ATERF-1	Not Available	68.84%
Motif_60	AtERF-4; AtERF-3	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	68.76%
Matrix_272	DEAR4	Not Available	68.33%
Matrix_484	ATERF13	Not Available	67.92%
Matrix_146	ORA47	Not Available	67.90%
Matrix_92	AT1G33760	Not Available	67.82%
Matrix_360	ORA59	Not Available	67.22%
Matrix_343	AT2G33710	Not Available	67.11%
Matrix_252	RAP2.6	Not Available	66.96%
Matrix_377	AT1G75490; DREB2C; AT2G40350; AT5G18450	Not Available	66.56%
Motif_457	AtERF-4; AtERF-3; AtERF-1; AtERF-2; AtERF-5	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	66.30%
Motif_509	AtTINY2	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana	66.07%
Matrix_517	ERF12	Not Available	66.04%
Motif_37	AtERF-4	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	65.17%
Matrix_321	HRD	Not Available	64.39%
Matrix_420	ANAC58	Not Available	63.59%
Matrix_260	CAMTA3	Not Available	63.52%
Matrix_462	ATERF-8	Not Available	63.23%
Matrix_395	AT1G19210; ORA47; AT4G31060; AT5G21960	Not Available	63.16%
Motif_219	E2Fa	The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants	62.84%
Motif_444	OCTAMOTIF2	Octamer motif found in histone-gene-specific consensus sequences; 200 base upstream from the initiation codon ATG; Exist in all of seven plant histone genes	62.57%
Matrix_169	E2F1	Not Available	62.47%
Matrix_387	ORA47	Not Available	62.33%
Matrix_23	ANAC46	Not Available	62.23%
Matrix_154	AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130	Not Available	61.87%
Matrix_406	ATERF-7	Not Available	61.64%
Motif_144	DREB2A; DREB1A	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	60.79%
Motif_625	AtERF-4; AtERF-3	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	60.70%
Matrix_456	bZIP60	Not Available	60.61%
Matrix_151	ASIL1	Not Available	60.45%
Matrix_373	E2FE	Not Available	60.15%
Motif_435	E2FBNTRNR	E2Fb found in the tobacco RNR (Ribonucleotide reductase) gene promoter; Binding site of tobacco E2F; Involved in upregulation of the promoter at G1/S transition; dE2F (distal reverse E2F element) important for regulating specific RNR1a gene expression in respsonse to UV-C irradiation	59.96%
Matrix_334	AT3G23230	Not Available	59.84%
Matrix_5	AT5G51190; ERF104	Not Available	59.81%
Motif_191	AtERF-4; AtERF-3	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	59.52%
Matrix_282	bZIP60	Not Available	59.44%
Motif_265	GCAACREPEATZMZEIN	GCAAC repeat found in the 22bp recognition site for beta-1 factor in the promoter of beta-zein (prolamin type) gene of maize; GCAAC is the core recognition sequence of the protein encoded by the retroviral oncogene myb	59.42%
Matrix_492	ETT	Not Available	59.13%
Matrix_515	ddf2; ATCBF3; CBF1; CBF4	Not Available	58.34%
Matrix_59	AT4G00238; AT4G00250	Not Available	58.29%
Matrix_228	TGA2	Not Available	58.24%
Matrix_374	AT5G07580; AT5G61590	Not Available	57.98%
Matrix_482	AT2G25650; AT4G00270	Not Available	57.78%
Motif_544	CACGCAATGMGH3	Sequence found in D4 element in Soybean GH3 gene promoter; Showed constitutive activity with TGTCTC element; Confers auxin inducibility; Binding site of nuclear protein	57.27%
Matrix_171	LBD3; LBD4	Not Available	57.11%
Matrix_170	AT5G47660	Not Available	57.02%
Matrix_190	ATERF1	Not Available	56.99%
Matrix_253	ETT	Not Available	56.79%
Matrix_292	FTQ4	Not Available	56.51%
Matrix_344	ATERF15; AT4G18450	Not Available	56.49%
Motif_89	AtTINY2	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana	56.36%
Motif_394	AtTINY2	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana	56.26%
Motif_32	DREB2A; DREB1A; AtTINY2; DREB1C; DREB1B	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana. Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems.Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression.Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit.Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	56.26%
Motif_374	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	56.26%
Matrix_130	TCP16	Not Available	56.21%
Motif_320	AGCBOXNPGLB	AGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC box	56.16%
Motif_602	E2Fc; E2Fd	The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants	55.97%
Motif_97	E2Fc; E2Fd	The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants	55.86%
Matrix_475	AT5G64220	Not Available	55.83%
Matrix_287	ERF2	Not Available	55.77%
Matrix_20	ANAC030; NST1; NAC066	Not Available	55.59%
Matrix_40	TCP2	Not Available	55.39%
Matrix_193	RAV1	Not Available	55.36%
Matrix_265	NGA3	Not Available	55.36%
Matrix_242	AT2G25820; AT3G16280; AT4G32800; TINY2; tny	Not Available	55.30%
Matrix_116	ANAC55	Not Available	54.83%
Motif_393	AUXREPSIAA4	AuxRE (Auxine responsive element ) of pea PS-IAA4/5 gene; Indoleacetic acid-inducible genes; domain A; TGA1a is preferentially expressed in root tip meristems; TGA1a may contribute to the expression of GST isoenzymes, especially in root tip meristems	54.79%
Matrix_155	RAP2.6; ERF110; ABR1	Not Available	54.30%
Matrix_312	ARF11; MP; ARF6; IAA21; ARF8; ARF4	Not Available	54.28%
Motif_99	DREB1A; DREB1C; DREB1B	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression;Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit	54.27%
Motif_385	GGTCCCATGMSAUR	Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter; Involved in auxin responsiveness	54.25%
Motif_680	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	54.24%
Motif_313	ERF1 BS in AtCHI-B	Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature	54.10%
Motif_368	CBF1 BS in cor15a	Determinants in the sequence specific binding of two plant transcription factors, CBF1 and NtERF2, to the DRE and GCC motifs	54.09%
Matrix_348	AT5G51910	Not Available	54.08%
Matrix_450	SPL7	Not Available	53.65%
Motif_128	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	53.51%
Matrix_101	ERF5	Not Available	53.43%
Motif_620	DREB1&2 BS in rd29a	Related to responsiveness to drought, low-temperature or high-salt stress; Binding site of DREB1 and DREB2: Binding site of Arabidopsis CBF1(C-repeat/DRE binding factor); Overexpression of DREB1A activated the expression of stress tolerance genes; CBF1 overexpression induces COR genes and enhances freezing tolerance; Heterologous CBF1 expression enhances oxidative stresses tolerance; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis;Improving plant drought, salt, and freezing tolerance by gene transfer of a single stress-inducible transcription factor	53.43%
Motif_203	bZIP23; bZIP19	Arabidopsis thaliana transcription factors bZIP19 and bZIP23 regulate the adaptation to zinc deficiency	53.41%
Motif_94	UP1ATMSD	Up1 motif found in 162 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis	53.40%
Matrix_73	DEAR3; RAP2.9; RAP2.10	Not Available	53.36%
Matrix_196	TCP20; AT5G41030	Not Available	53.31%
Motif_318	CGCGBOXAT	CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs	53.23%
Matrix_144	AT5G08330; AT5G23280	Not Available	53.16%
Matrix_42	AT2G45680	Not Available	53.08%
Matrix_478	AT1G01250	Not Available	52.96%
Matrix_500	WRKY43	Not Available	52.94%
Matrix_316	WRKY15; WRKY39; WRKY7; WRKY74	Not Available	52.85%
Matrix_243	RAP2.12; RAP2.2	Not Available	52.76%
Motif_674	SPL4; SPL1; SPL5	Molecular characterisation of the Arabidopsis SBP-box genes. Gene,A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors	52.69%
Matrix_446	LBD16	Not Available	52.69%
Matrix_139	OBF5	Not Available	52.54%
Motif_127	SBOXATRBCS	S-box conserved in several rbcS promoters in Arabidopsis; ABI4 binding site; Important for the sugar and ABA responsiveness of CMA5	52.52%
Matrix_273	ANAC55	Not Available	52.47%
Matrix_393	REM1	Not Available	52.46%
Matrix_186	FHY3	Not Available	52.45%
Matrix_281	TCP13	Not Available	52.35%
Matrix_56	BZIP17; BZIP28; BZIP49	Not Available	52.34%
Matrix_430	TOE2	Not Available	52.30%
Motif_405	DREB2A; DREB1A	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems. Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	52.17%
Matrix_329	WRKY12	Not Available	52.07%
Matrix_259	AT1G50680; AT1G51120	Not Available	52.01%
Matrix_293	WRKY38	Not Available	51.96%
Matrix_504	WRKY40	Not Available	51.78%
Matrix_405	DREB2C	Not Available	51.71%
Matrix_322	NST3; ANAC015; BRN2	Not Available	51.44%
Matrix_197	NAP	Not Available	51.39%
Motif_684	MNF1ZMPPC1	MNF1 binding site in maize Ppc1 (phosphoenolpyruvate carboxylase) gene promoter; Involved in light induction	51.30%
Motif_226	E2F1OSPCNA	re2f-1 found in the promoter of rice PCNA gene; Located between -142 and -135; te2f-1 found in the promote of Tobacco PCBA gene; Located between -122 and -115; Binding site of OsE2F1 and OsE2F2; Involved in transcriptional activation in actively dividing cells and tissue	51.26%
Matrix_110	ATABI4; AT3G57600	Not Available	51.05%
Matrix_502	AT3G13040	Not Available	51.00%
Matrix_70	GATA26	Not Available	50.95%
Matrix_507	TCP3	Not Available	50.85%
Matrix_314	WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52	Not Available	50.78%
Motif_621	bZIP23; bZIP19	Arabidopsis thaliana transcription factors bZIP19 and bZIP23 regulate the adaptation to zinc deficiency	50.68%
Matrix_297	TCP15	Not Available	50.65%
Matrix_376	WRKY45	Not Available	50.55%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	50.49%
Matrix_415	WRKY27	Not Available	50.38%
Motif_577	GRAZMRAB28	GRA; GC-rich rab activator; Found in the promoter of ABA responsive rab28 gene from maize; Similar (seven of 12 bases) to the GRA element from the maize rab17 promoter (GRAZMRAB17); Found at -138 to -130	50.34%
Motif_259	AtSR1	A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants	50.26%
Matrix_463	HAT3.1	Not Available	50.18%
Matrix_249	WRKY11	Not Available	50.07%
Matrix_26	ATMYB3; MYB24	Not Available	50.00%
Matrix_325	WRKY4; WRKY3; WRKY58; ATWRKY34; WRKY20; ATWRKY2	Not Available	50.00%