PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_116
Name: ANAC55
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_420	ANAC58	Not Available	80.29%
Matrix_273	ANAC55	Not Available	79.76%
Matrix_23	ANAC46	Not Available	79.55%
Matrix_456	bZIP60	Not Available	77.08%
Matrix_20	ANAC030; NST1; NAC066	Not Available	75.90%
Matrix_323	BIM3	Not Available	74.45%
Matrix_158	AT1G03040; LRL1; UNE12; LRL2; LRL3	Not Available	73.04%
Matrix_129	ABF1	Not Available	72.97%
Matrix_449	BIM2	Not Available	72.94%
Matrix_200	PIL5; AT4G28790; AT4G28800; AT4G28811; AT4G28815	Not Available	72.87%
Matrix_120	BEE2	Not Available	72.67%
Matrix_389	ILR3	Not Available	71.93%
Matrix_330	MYC2; TT8	Not Available	71.85%
Matrix_465	MYC4	Not Available	71.67%
Motif_665	ACEATCHS	ACEAtCHS (ACGT containing element) found in the LRU (light-responsive unit) in Arabidopsis chalcone synthase (CHS) gene promoter; Required for UV-B and UV-1/blue light responsiveness; Transcriptional repression by AtMYB4 controls production of UV-protecting sun screens in Arabidopsis; AtMYB4 mutant shows enhanced levels of sinapate ester in leaves and tolerance of UV-B irradiation; AtMYB4 expression is downregulated by exposure to UV-B light; Identification of UV/blue light-response elements in the Arabidopsis thaliana chalcone synthase promoter using a homologous protoplast transient expression system	67.91%
Matrix_228	TGA2	Not Available	67.52%
Matrix_282	bZIP60	Not Available	67.31%
Matrix_332	SPT; ALC	Not Available	65.73%
Matrix_422	TOE1	Not Available	65.63%
Matrix_300	bZIP68; bZIP16	Not Available	65.28%
Matrix_122	ABF1; AREB2	Not Available	65.15%
Matrix_1	TOE2	Not Available	65.10%
Matrix_296	GBF2	Not Available	65.05%
Motif_377	SURE2STPAT21	Sucrose Responsive Element 2 (SURE2); A motif conserved among genes regulated by sucrose; See also SURE1ST; Found between -184 and -156 bp in the patatin (a major tuber protein) gene promoter of potato	64.68%
Motif_56	O2F3BE2S1	opaque-2 recognition site F3 in Bertholletia excelsa (Brazil nut tree) 2S storage protein gene (be2S1); O2 protein binds to F1, F2 and F3 sequences of be2S1 promoter; F3 is hybrid of A/G box	64.32%
Matrix_430	TOE2	Not Available	64.05%
Matrix_66	AtLEC2	Genes directly regulated by LEAFY COTYLEDON2 provide insight into the control of embryo maturation and somatic embryogenesis	63.95%
Matrix_139	OBF5	Not Available	63.92%
Matrix_479	TOE1	Not Available	63.70%
Matrix_322	NST3; ANAC015; BRN2	Not Available	63.55%
Motif_528	ABI5	The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis	63.39%
Matrix_277	RAP2.6	Not Available	63.28%
Matrix_14	ZCW32; AT5G62610	Not Available	63.15%
Matrix_247	PIF3	Not Available	62.97%
Matrix_171	LBD3; LBD4	Not Available	62.71%
Matrix_395	AT1G19210; ORA47; AT4G31060; AT5G21960	Not Available	62.22%
Motif_19	AAGACGTAGATACL12	Sequence found in Arabidopsis acyl carrier protein (ACP), Acl1.2, gene promoter; Contains bZIP core motif (ACGT)	62.13%
Motif_542	ABI5; AtMYC2; HY5	A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of blue light-mediated photomorphogenic growth. Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis	61.97%
Motif_590	MYB3 binding site motif	Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses	61.96%
Matrix_259	AT1G50680; AT1G51120	Not Available	61.85%
Motif_202	OPAQUE2ZM22Z	Opaque-2 (O2) target sequence in maize 22- and 27-kD zein promoters; ACGT motif; Related to seed expression; O2 target sequence; Gene: maize 22-kD zein; transacting factor: 02	61.77%
Matrix_151	ASIL1	Not Available	61.65%
Motif_544	CACGCAATGMGH3	Sequence found in D4 element in Soybean GH3 gene promoter; Showed constitutive activity with TGTCTC element; Confers auxin inducibility; Binding site of nuclear protein	61.24%
Matrix_204	WOX13	Not Available	60.88%
Matrix_320	MYC4	Not Available	60.86%
Matrix_141	AT3G25990	Not Available	60.83%
Motif_162	ABRE3HVA22	ABRE3 of barley HVA22 gene; G-box; component of ABA response complex in HVA22 gene; ABA response complex 1(ABRC1)=A3(previously designated ABRE3)+CE1	60.75%
Matrix_60	AT1G01260; AT5G57150	Not Available	60.45%
Matrix_233	MYC3	Not Available	60.45%
Matrix_365	AT1G10120; AT1G25330; CIB5; AT1G68920; AT3G23690; CIB1	Not Available	60.38%
Matrix_476	bHLH115; bHLH34	Not Available	60.27%
Matrix_188	SPL4	Not Available	60.25%
Matrix_150	UNE10; PIF7	Not Available	60.22%
Matrix_111	ABF3	Not Available	60.10%
Matrix_396	AP3	Not Available	59.99%
Matrix_134	ABF1	Not Available	59.98%
Matrix_339	bHLH104	Not Available	59.80%
Matrix_81	YAB1	Not Available	59.70%
Motif_17	AUXRETGA1GMGH3	TGA-box #1 in putative auxin-resonsive element (AUXRE) of soybean GH3 promoter; Strong binding site for proteins in plant nuclear extracts	59.70%
Motif_2	ACGTSEED2	ACGT motif related to seed expression; Gene: French bean phaseolin; transacting factor: 02	59.65%
Matrix_265	NGA3	Not Available	59.60%
Matrix_193	RAV1	Not Available	59.60%
Matrix_437	MYC2	Not Available	59.25%
Motif_295	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	59.24%
Matrix_145	GBF4; AT5G44080	Not Available	59.17%
Matrix_56	BZIP17; BZIP28; BZIP49	Not Available	59.05%
Matrix_221	SPL7	Not Available	58.82%
Matrix_480	BES1	Not Available	58.80%
Matrix_143	GATA14; GATA6; GATA5	Not Available	58.78%
Matrix_255	cdf3	Not Available	58.76%
Motif_128	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	58.76%
Matrix_53	MYC3	Not Available	58.69%
Motif_67	LS5ATPR1	LS5; A negative regulatory element found in the Arabidopsis PR-1 gene promoter; Binding site of TGA2; NPR1 increased the binding of TGA2 to the element; NPR1 is essential in activating systemic, inducible plant defense response; TGA6 expressed in roots in young seedlings; TGA2.1 is a direct transcriptional activator; TGA2.2 stabilizes TGA2.1 binding; The Arabidopsis NPR1/NIM1 protein enhances the DNA binding activity of a subgroup of the TGA family of bZIP transcription factors	58.49%
Motif_265	GCAACREPEATZMZEIN	GCAAC repeat found in the 22bp recognition site for beta-1 factor in the promoter of beta-zein (prolamin type) gene of maize; GCAAC is the core recognition sequence of the protein encoded by the retroviral oncogene myb	58.44%
Matrix_438	AtbZIP63	Not Available	58.39%
Matrix_326	AT5G07310; Rap2.6L; AT5G61890	Not Available	58.16%
Matrix_419	TGA9; PAN; TGA6; bZIP65	Not Available	58.14%
Motif_278	CELLCYCLESC	cell cycle box found in URS2 (-940/-200) of HO gene of S.cerevisiae; cell-cycle-specific activation of transcription	58.11%
Matrix_80	BIM1	Not Available	58.06%
Motif_212	GARE2OSREP1	Gibberellin-responsive element (GARE) found in the promoter region of a cystein proteinase (REP-1) gene in rice	58.06%
Matrix_109	GBF3	Not Available	58.05%
Matrix_260	CAMTA3	Not Available	57.95%
Matrix_44	CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2	Not Available	57.86%
Matrix_113	ABI5	Not Available	57.83%
Motif_499	AtMYC2	A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of blue light-mediated photomorphogenic growth	57.81%
Motif_399	UPRMOTIFIAT	Motif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc.	57.65%
Motif_666	MYB binding site promoter	A flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genes	57.64%
Matrix_472	ZN_C2_H2	Not Available	57.61%
Matrix_442	AT5G62260	Not Available	57.58%
Matrix_373	E2FE	Not Available	57.54%
Matrix_397	GT2L	Not Available	57.46%
Matrix_354	AHL12	Not Available	57.33%
Matrix_331	GBF1	Not Available	57.25%
Matrix_104	PI	Not Available	57.24%
Motif_200	GBOXLERBCS	G box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBF	57.20%
Motif_374	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	57.18%
Motif_4	NAP	An abscisic acid-AtNAP transcription factor-SAG113 protein phosphatase 2C regulatory chain for controlling dehydration in senescing Arabidopsis leaves	57.18%
Matrix_478	AT1G01250	Not Available	57.15%
Matrix_59	AT4G00238; AT4G00250	Not Available	57.08%
Matrix_355	ERF10; ERF11	Not Available	57.04%
Motif_566	AREB1; AREB2	Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	56.94%
Matrix_346	AtMYB70; MYB73	Not Available	56.90%
Motif_406	ABREBZMRAB28	ABA-responsive element (ABRE B) found at -105 to -96 in maize rab28; Maize rab28 is ABA-inducible in embryos and vegetative tissues	56.88%
Matrix_87	AT1G19000	Not Available	56.85%
Matrix_166	TGA4	Not Available	56.81%
Matrix_55	PIF3	Not Available	56.80%
Matrix_73	DEAR3; RAP2.9; RAP2.10	Not Available	56.74%
Motif_498	SGBFGMGMAUX28	bZIP proteins SGBF-1 and SGBF-2 binding site in soybean GmAux28 gene promoter	56.47%
Motif_252	GBOXPC	G box; Binding site of parsley cytosolic G-box binding factors (cytosolic GBFs); Cytosolic G-Box binding activity is modulated by light; DNA binding activity of cytosolic GBFs is regulated by cytosolic phosphorylation/dephospholylation activities; Cytosolic GBFs are translocated to the nucleus in a light-regulated manner	56.36%
Matrix_236	CCA1	Not Available	56.34%
Matrix_388	SNZ; SMZ; TOE2	Not Available	56.24%
Matrix_454	AT1G77200; ATERF38; AT4G16750; AT5G52020	Not Available	56.16%
Matrix_70	GATA26	Not Available	56.13%
Matrix_128	TGA2	Not Available	56.08%
Matrix_170	AT5G47660	Not Available	56.08%
Matrix_307	RGL2; RGL3	Not Available	56.06%
Matrix_108	PIF4	Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses	56.04%
Motif_571	GBOXSORBCS1	G-box found in the spinach RBCS-1 gene promoter; Located between -219 and -212; G-box trimer confers relatively high level expression in roots	55.95%
Matrix_7	PIF4	Not Available	55.94%
Motif_599	LREBOXIIPCCHS1; HY5	BoxII; Light responsive element (LRE) found in the parsley CHS-1 (chalcone synthase-1) gene promoter; Required for light responsiveness; nuclear protein binding site; Highly conserved in various light inducible gene promoters; Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	55.82%
Matrix_164	AT1G02030; AT2G45120; AZF2; AT3G60580	Not Available	55.80%
Matrix_369	AT2G18300	Not Available	55.72%
Motif_418	ABRE2HVA22	ABRE2 of barley HVA22 gene; G-box; component of ABA response complex in HVA22 gene; see ABRE3 of HVA22 gene; see CE1 (coupling element 1 = TGCCACCGG)	55.70%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	55.69%
Motif_541	AtSR1	A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants	55.65%
Matrix_333	GATA3	Not Available	55.65%
Matrix_137	SPL1; SPL12	Not Available	55.61%
Motif_197	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	55.60%
Motif_76	SURE1STPAT21	Sucrose Responsive Element (SURE); A motif conserved among genes regulated by sucrose; See also SURE2STPAT21; Found between -184 and -156 bp in the patatin (a major tuber protein) gene promoter of potato	55.53%
Matrix_311	TGA1	Not Available	55.52%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	55.46%
Motif_311	ANAC019; ANAC055; ANAC072	Isolation and functional analysis of Arabidopsis stress-inducible NAC transcription factors that bind to a drought-responsive cis-element in the early responsive to dehydration stress 1 promoter	55.44%
Motif_620	DREB1&2 BS in rd29a	Related to responsiveness to drought, low-temperature or high-salt stress; Binding site of DREB1 and DREB2: Binding site of Arabidopsis CBF1(C-repeat/DRE binding factor); Overexpression of DREB1A activated the expression of stress tolerance genes; CBF1 overexpression induces COR genes and enhances freezing tolerance; Heterologous CBF1 expression enhances oxidative stresses tolerance; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis;Improving plant drought, salt, and freezing tolerance by gene transfer of a single stress-inducible transcription factor	55.35%
Matrix_223	MYB60; ATMYB31; ATMYB30; MYB94; MYBCOV1	Not Available	55.29%
Matrix_492	ETT	Not Available	55.19%
Matrix_183	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	55.15%
Matrix_50	ATERF14; AT5G43410	Not Available	54.97%
Matrix_352	LEC2	Not Available	54.96%
Motif_254	MYB46; MYB83	MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes	54.94%
Matrix_486	MYB83	MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes	54.94%
Matrix_400	MYB46	MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes	54.94%
Matrix_432	AT1G77920	Not Available	54.87%
Matrix_90	BEE1; BEE3; AT3G07340; AT5G48560; AT5G50915	Not Available	54.86%
Matrix_119	RRTF1	Not Available	54.83%
Motif_112	GBOX10NT	One of 11 G-box sequences in tobacco; Required for high-level constitutive expression in seed, leaf, root, axillary bud, almost all parts of flower buds and pollen	54.81%
Motif_300	ACGTROOT1; HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. ACGT motif related to root expression; Gene: synthetic; perfect palindromic sequence (PA) containing G-box-related sequence; transacting factor: TAF-1; Binding of SGBF-1 (a Soybean G-box binding bZIP transcription factor) to ABRE is enhanced by SCOF-1 (a zinc finger protein ); Transcription of SCOF-1 is induced by low temperature and ABA	54.78%
Matrix_474	ANAC014; ANAC062; NTL9; TIP	Not Available	54.78%
Matrix_93	YAB5	Not Available	54.77%
Matrix_64	PIF5	Not Available	54.71%
Motif_680	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	54.66%
Matrix_57	WIN1; SHN3; SHN2	Not Available	54.65%
Matrix_382	AT3G04850	Not Available	54.64%
Motif_407	CE3OSOSEM	CE3 (Coupling Element 3) found in the promoter of the rice Osem gene; Required for ABA-responsiveness and VP1 activation; Binding site of TRAB1; Motif A and CE3 are functionally equivalent; TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption	54.61%
Matrix_362	DEAR3	Not Available	54.61%
Matrix_363	RAP2.3	Not Available	54.59%
Matrix_511	AT1G05805; AT1G35460; AT1G51140; AT2G42280; AT2G43140; AT4G09180	Not Available	54.46%
Matrix_242	AT2G25820; AT3G16280; AT4G32800; TINY2; tny	Not Available	54.37%
Matrix_393	REM1	Not Available	54.36%
Matrix_125	AHL12	Not Available	54.34%
Matrix_154	AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130	Not Available	54.32%
Matrix_475	AT5G64220	Not Available	54.31%
Matrix_341	HMGA	Not Available	54.31%
Matrix_446	LBD16	Not Available	54.18%
Motif_107	O2F2BE2S1	opaque-2 recognition site F2 in Bertholletia excelsa (Brazil nut tree) 2S storage protein gene (be2S1); O2 protein binds to F1, F2 and F3 sequences of be2S1 promoter; F2 is a new O2-binding sequence related to the O2 target sites of the Coix alpha-coxin, the maize b-32 genes and the AP-1 pseudopalindrome	54.17%
Matrix_385	DEAR4	Not Available	54.15%
Motif_535	ACIPVPAL2	ACI element found at -83 to -74 of bean PAL2 promoter; AC-rich element; ACI element is required for vascular-specific gene expression; See also ACIIPVPAL2 and ACIIIPVPAL2; Three AC-elements, which are possible Myb protein binding sites, together with a G-box, interact to direct the complex patterns of tissue-specific expression of pAL2 gene	54.08%
Motif_237	O2F1BE2S1	opaque-2 recognition site F1 in Bertholletia excelsa (Brazil nut tree) 2S storage protein gene (be2S1); O2 protein binds to F1, F2 and F3 sequences of be2S1 promoter; F1 is hybrid C/G box	53.83%
Matrix_135	ABI3	Not Available	53.79%
Matrix_181	Dof5.7	Not Available	53.76%
Motif_317	GAREAT	GARE (GA-responsive element); Occurrence of GARE in GA-inducible, GA-responsible, and GA-nonresponsive genes found in Arabidopsis seed germination was 20, 18, and 12%, respectively	53.74%
Matrix_156	POC1	Not Available	53.69%
Matrix_198	STZ; C2H2; AZF3	Not Available	53.69%
Matrix_308	INO	Not Available	53.67%
Matrix_436	AT3G49930; AZF1	Not Available	53.64%
Motif_606	NAPINMOTIFBN	Sequence found in 5' upstream region (-6, -95, -188) of napin (2S albumin) gene in Brassica napus; Interact with a protein present in crude nuclear extracts from developing B. napus seeds	53.52%
Motif_403	WINPSTPIIIK	Binding site of wound-inducible nuclear protein from wounded tomato leaves; Found in the promoter region of a protease inhibitor IIK gene from potato	53.51%
Matrix_278	AtbZIP44	Not Available	53.35%
Matrix_377	AT1G75490; DREB2C; AT2G40350; AT5G18450	Not Available	53.32%
Matrix_244	DREB2C	Not Available	53.32%
Matrix_410	TOE2	Not Available	53.29%
Matrix_312	ARF11; MP; ARF6; IAA21; ARF8; ARF4	Not Available	53.24%
Matrix_61	ATCBF3	Not Available	53.08%
Motif_421	TAC1	Regulation of telomerase in Arabidopsis by BT2, an apparent target of TELOMERASE ACTIVATOR1	53.07%
Matrix_379	RHL41	Not Available	53.01%
Matrix_515	ddf2; ATCBF3; CBF1; CBF4	Not Available	53.01%
Motif_404	AACACOREOSGLUB1	Core of AACA motifs found in rice glutelin genes, involved in controlling the endosperm-specific expression; AACA is also closely associated with the GCN4 motif in all rice glutelin genes and together have been shown to confer endosperm-specific enhancement to the truncated -90 CaMV 35S promoter	52.99%
Matrix_167	ZAT6	Not Available	52.97%
Motif_251	SUP	The Arabidopsis SUPERMAN protein is able to specifically bind DNA through its single Cys2-His2 zinc finger motif	52.95%
Matrix_27	ATAIB; ATNIG1	Not Available	52.93%
Motif_95	UPRE2AT	XBP1 binding site-like sequence found in the plant UPRE (unfolded protein response element) in Arabidopsis thaliana;Either of ERSEII or XBP1 binding sites is essential and sufficient for the UPR	52.89%
Matrix_174	ZAT2	Not Available	52.87%
Matrix_503	AT2G37430; AT3G53600	Not Available	52.80%
Matrix_477	RAV1	Not Available	52.78%
Matrix_467	RAV1	Not Available	52.78%
Matrix_34	RAV1_2	RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	52.78%
Motif_371	DRE-like promoter motif	The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses	52.77%
Matrix_153	AP2	Not Available	52.75%
Matrix_433	ATERF1	Not Available	52.63%
Motif_244	ABRE-like binding site motif	Not Available	52.57%
Matrix_321	HRD	Not Available	52.56%
Motif_158	ZDNAFORMINGATCAB1	Z-DNA-forming sequence found in the Arabidopsis chlorophyll a/b binding protein gene (cab1) promoter; Involved in light-dependent developmental expression of the gene; Z-box; Activation of Z-box containing promoters is regulated by downstream regulatory components, COP1 and HY5; phyB and CRY1 photoreceptors act redundantly to induce Z-box containing promoters in white light; Identification of upstream regulatory elements involved in the developmental expression of the Arabidopsis thaliana cab1 gene	52.55%
Matrix_274	EDF3	Not Available	52.53%
Matrix_37	GATA27	Not Available	52.51%
Motif_400	ABREAZMRAB28	ABA-responsive element (ABRE A) found at -148 to -139 in maize rab28; Maize rab28 is ABA-inducible in embryos and vegetative tissues	52.50%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	52.47%
Motif_410	ANAERO1CONSENSUS	One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curator	52.34%
Matrix_92	AT1G33760	Not Available	52.27%
Matrix_394	DREB_U	Not Available	52.25%
Motif_516	BZIP12; ABI5	The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis	52.24%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	52.24%
Matrix_460	NAM; anac025; ATNAC2	Not Available	52.15%
Matrix_10	STY1	Not Available	52.09%
Motif_153	MARABOX1	A-box found in SAR(scaffold attachment region; or matrix attachment region, MAR)	52.07%
Matrix_101	ERF5	Not Available	51.97%
Motif_120	ABRETAEM	ABRE (ABA responsive element) found in wheat Em gene; transacting factor: EMBP-1; EMBP-1 binds to CACGTGGC	51.97%
Matrix_374	AT5G07580; AT5G61590	Not Available	51.93%
Motif_89	AtTINY2	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana	51.90%
Motif_614	MYBGAHV	Central element of gibberellin (GA) response complex (GARC) in high-pI alpha-amylase gene in barley; Similar to c-myb and v-myb consensus binding site; GAmyb binds specifically to the TAACAAA box in vitro; GAmyb is the sole GA-regulated transcriptional factor required for transcriptional activation of the high-pI alpha-amylase; GARC consist of the pyrimidine, TAACAAA and TATCCAC boxes; GARE in RAmy1A gene; GARE and pyrimidine box in RAmy1A are partially involved in sugar repression	51.80%
Motif_685	PALINDROMICCBOXGM	Palindromic C-box in soybean;bZIP factors, STGA1 and STFs (STF1 and STF2) found in soybean apical hypocotyl, bind to this sequence	51.77%
Matrix_72	CDF2	Not Available	51.77%
Matrix_84	AtGRF6	Not Available	51.71%
Matrix_46	AT4G21895	Not Available	51.67%
Matrix_258	WOX13	Not Available	51.57%
Matrix_500	WRKY43	Not Available	51.56%
Matrix_239	AT5G04390	Not Available	51.56%
Matrix_409	DEAR3	Not Available	51.53%
Matrix_173	ZAP1	Not Available	51.49%
Motif_478	DREB2A; DREB1A	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	51.48%
Matrix_264	ATAREB1	Not Available	51.44%
Matrix_162	AtPHR1	Not Available	51.43%
Matrix_138	RRTF1	Not Available	51.26%
Matrix_211	MYB3	Not Available	51.21%
Matrix_406	ATERF-7	Not Available	51.17%
Matrix_463	HAT3.1	Not Available	51.12%
Matrix_448	ATERF6	Not Available	51.12%
Matrix_212	ATHB-12	Not Available	51.12%
Motif_101	MYB61	AtMYB61, an R2R3-MYB transcription factor, functions as a pleiotropic regulator via a small gene network	51.09%
Motif_473	ABREOSRGA1	ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxia	51.02%
Motif_218	ABRERATCAL	ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE	51.01%
Matrix_142	ZFP8	Not Available	51.01%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	51.01%
Matrix_8	KAN1	Not Available	51.00%
Matrix_368	ATWRKY56; WRKY45; WRKY75; WRKY24	Not Available	50.99%
Matrix_227	AT1G64620	Not Available	50.91%
Matrix_126	RBE	Not Available	50.90%
Motif_338	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	50.90%
Matrix_469	NAC041; NAC083	Not Available	50.88%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	50.83%
Motif_177	-300MOTIFZMZEIN	Motif in -300 elements of alpha-zein genes of maize; homologous to the sequence to which transacting factors of AP-1, fos, jun or yeast hisS bind	50.83%
Matrix_367	REM1	Not Available	50.79%
Motif_297	Bellringer/replumless/pennywise BS1 IN AG	Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems	50.78%
Motif_141	BP5OSWX	OsBP-5 (a MYC protein) binding site in Wx promoter	50.72%
Motif_74	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	50.67%
Matrix_328	AT1G76580	Not Available	50.66%
Motif_211	ABREMOTIFIOSRAB16B	Motif I found in the promoter of rice rab16B gene; Motif I and motif III are both required for ABA responsiveness; However, each can substitute for the other	50.62%
Motif_291	ABFs binding site motif	Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element	50.62%
Matrix_288	RAP2.3	Not Available	50.60%
Matrix_241	HB-1; AT5G44180	Not Available	50.57%
Matrix_440	LFY	Not Available	50.55%
Matrix_504	WRKY40	Not Available	50.53%
Matrix_402	TOE1	Not Available	50.50%
Motif_349	QARBNEXTA	QAR (quantitative activator region) in promoter region of Brassica napus extA extensin gene	50.48%
Motif_24	CAMTA3	Roles for Arabidopsis CAMTA transcription factors in cold-regulated gene expression and freezing tolerance	50.46%
Matrix_418	KNAT6; KNAT2	Not Available	50.41%
Matrix_41	anac058	Not Available	50.40%
Matrix_112	TBP2; TFIID-1	Not Available	50.39%
Matrix_240	AT4G29000	Not Available	50.37%
Matrix_197	NAP	Not Available	50.36%
Matrix_262	ATGRP2B; CSDP2	Not Available	50.21%
Motif_138	RAP2.2	Transcription factor RAP2.2 and its interacting partner SINAT2: stable elements in the carotenogenesis of Arabidopsis leaves	50.20%
Matrix_17	WRKY22	Not Available	50.20%
Motif_214	TAC1	Regulation of telomerase in Arabidopsis by BT2, an apparent target of TELOMERASE ACTIVATOR1	50.20%
Motif_92	ABREATRD22	ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22	50.06%
Matrix_444	AT1G19485; AT4G17950	Not Available	50.06%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	50.02%