PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_1
Name: TOE2
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_422	TOE1	Not Available	96.50%
Matrix_388	SNZ; SMZ; TOE2	Not Available	72.72%
Motif_56	O2F3BE2S1	opaque-2 recognition site F3 in Bertholletia excelsa (Brazil nut tree) 2S storage protein gene (be2S1); O2 protein binds to F1, F2 and F3 sequences of be2S1 promoter; F3 is hybrid of A/G box	72.34%
Motif_162	ABRE3HVA22	ABRE3 of barley HVA22 gene; G-box; component of ABA response complex in HVA22 gene; ABA response complex 1(ABRC1)=A3(previously designated ABRE3)+CE1	69.16%
Matrix_158	AT1G03040; LRL1; UNE12; LRL2; LRL3	Not Available	66.29%
Matrix_323	BIM3	Not Available	65.92%
Matrix_116	ANAC55	Not Available	65.10%
Matrix_389	ILR3	Not Available	64.79%
Matrix_330	MYC2; TT8	Not Available	64.79%
Matrix_465	MYC4	Not Available	64.36%
Matrix_120	BEE2	Not Available	64.22%
Matrix_200	PIL5; AT4G28790; AT4G28800; AT4G28811; AT4G28815	Not Available	63.63%
Motif_202	OPAQUE2ZM22Z	Opaque-2 (O2) target sequence in maize 22- and 27-kD zein promoters; ACGT motif; Related to seed expression; O2 target sequence; Gene: maize 22-kD zein; transacting factor: 02	63.41%
Matrix_449	BIM2	Not Available	63.21%
Motif_371	DRE-like promoter motif	The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses	62.98%
Matrix_20	ANAC030; NST1; NAC066	Not Available	62.14%
Matrix_456	bZIP60	Not Available	61.48%
Matrix_247	PIF3	Not Available	61.11%
Matrix_273	ANAC55	Not Available	60.30%
Matrix_260	CAMTA3	Not Available	60.12%
Motif_112	GBOX10NT	One of 11 G-box sequences in tobacco; Required for high-level constitutive expression in seed, leaf, root, axillary bud, almost all parts of flower buds and pollen	59.90%
Motif_535	ACIPVPAL2	ACI element found at -83 to -74 of bean PAL2 promoter; AC-rich element; ACI element is required for vascular-specific gene expression; See also ACIIPVPAL2 and ACIIIPVPAL2; Three AC-elements, which are possible Myb protein binding sites, together with a G-box, interact to direct the complex patterns of tissue-specific expression of pAL2 gene	59.73%
Motif_293	NONAMERATH4	Nonamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 gene	59.32%
Matrix_129	ABF1	Not Available	58.55%
Motif_427	LS7ATPR1	LS7; A positive salicylic acid-inducible element found in the Arabidopsis PR-1 gene promoter; Binding site of TGA1; NPR1 increased the binding of TGA2 to the element; NPR1 is essential in activating systemic, inducible plant defense responses; TGA6 expressed in roots in young seedlings; TGA2.1 is a direct transcriptional activator; TGA2.2 stabilizes TGA2.1 binding; The Arabidopsis NPR1/NIM1 protein enhances the DNA binding activity of a subgroup of the TGA family of bZIP transcription factors	58.53%
Matrix_322	NST3; ANAC015; BRN2	Not Available	58.16%
Matrix_395	AT1G19210; ORA47; AT4G31060; AT5G21960	Not Available	58.09%
Matrix_73	DEAR3; RAP2.9; RAP2.10	Not Available	58.02%
Motif_399	UPRMOTIFIAT	Motif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc.	57.74%
Matrix_9	AT5G04760	Not Available	57.72%
Matrix_151	ASIL1	Not Available	57.65%
Matrix_420	ANAC58	Not Available	57.63%
Motif_516	BZIP12; ABI5	The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis	57.54%
Matrix_478	AT1G01250	Not Available	57.46%
Matrix_300	bZIP68; bZIP16	Not Available	57.19%
Matrix_492	ETT	Not Available	57.10%
Motif_252	GBOXPC	G box; Binding site of parsley cytosolic G-box binding factors (cytosolic GBFs); Cytosolic G-Box binding activity is modulated by light; DNA binding activity of cytosolic GBFs is regulated by cytosolic phosphorylation/dephospholylation activities; Cytosolic GBFs are translocated to the nucleus in a light-regulated manner	57.02%
Matrix_332	SPT; ALC	Not Available	56.92%
Matrix_14	ZCW32; AT5G62610	Not Available	56.55%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	56.54%
Matrix_321	HRD	Not Available	56.50%
Motif_54	LTREATLTI78	Putative low temperature responsive element (LTRE); Found in Arabidopsis thaliana low-temperature-induced (lti) genes, lti78 and lti65; Repeated four times in lti78 which is also known as cor78 and rd29A; Found also in barley low temperature responsive genes, blt4.2, blt4.6, blt4.9 (lipid transfer genes); cold inducible; See LTRECORE; Also present in rab18, kin1, and kin2; Differential expression of two related, low-temperature-induced genes in Arabidopsis thaliana	56.37%
Matrix_409	DEAR3	Not Available	56.31%
Matrix_242	AT2G25820; AT3G16280; AT4G32800; TINY2; tny	Not Available	55.97%
Matrix_339	bHLH104	Not Available	55.95%
Matrix_23	ANAC46	Not Available	55.73%
Matrix_296	GBF2	Not Available	55.43%
Matrix_329	WRKY12	Not Available	55.39%
Matrix_259	AT1G50680; AT1G51120	Not Available	55.28%
Matrix_57	WIN1; SHN3; SHN2	Not Available	55.08%
Matrix_10	STY1	Not Available	55.04%
Motif_571	GBOXSORBCS1	G-box found in the spinach RBCS-1 gene promoter; Located between -219 and -212; G-box trimer confers relatively high level expression in roots	55.00%
Matrix_415	WRKY27	Not Available	54.98%
Matrix_320	MYC4	Not Available	54.88%
Motif_406	ABREBZMRAB28	ABA-responsive element (ABRE B) found at -105 to -96 in maize rab28; Maize rab28 is ABA-inducible in embryos and vegetative tissues	54.84%
Motif_498	SGBFGMGMAUX28	bZIP proteins SGBF-1 and SGBF-2 binding site in soybean GmAux28 gene promoter	54.79%
Matrix_60	AT1G01260; AT5G57150	Not Available	54.78%
Matrix_171	LBD3; LBD4	Not Available	54.69%
Matrix_229	CDC5	A cdc5+ homolog of a higher plant, Arabidopsis thaliana	54.68%
Matrix_253	ETT	Not Available	54.62%
Matrix_432	AT1G77920	Not Available	54.49%
Matrix_382	AT3G04850	Not Available	54.41%
Matrix_326	AT5G07310; Rap2.6L; AT5G61890	Not Available	54.39%
Matrix_59	AT4G00238; AT4G00250	Not Available	54.31%
Matrix_128	TGA2	Not Available	54.26%
Matrix_197	NAP	Not Available	54.19%
Motif_630	WBOXNTCHN48	W box identified in the region between -125 and -69 of a tobacco class I basic chitinase gene CHN48; NtWRKY1, NtWRKY2 and NtWRKY4 bound to W box; NtWRKYs possibly involved in elicitor-respsonsive transcription of defense genes in tobacco	54.16%
Motif_599	LREBOXIIPCCHS1; HY5	BoxII; Light responsive element (LRE) found in the parsley CHS-1 (chalcone synthase-1) gene promoter; Required for light responsiveness; nuclear protein binding site; Highly conserved in various light inducible gene promoters; Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	54.15%
Matrix_355	ERF10; ERF11	Not Available	53.90%
Motif_237	O2F1BE2S1	opaque-2 recognition site F1 in Bertholletia excelsa (Brazil nut tree) 2S storage protein gene (be2S1); O2 protein binds to F1, F2 and F3 sequences of be2S1 promoter; F1 is hybrid C/G box	53.78%
Matrix_145	GBF4; AT5G44080	Not Available	53.74%
Matrix_377	AT1G75490; DREB2C; AT2G40350; AT5G18450	Not Available	53.69%
Matrix_438	AtbZIP63	Not Available	53.60%
Matrix_376	WRKY45	Not Available	53.59%
Matrix_240	AT4G29000	Not Available	53.53%
Matrix_113	ABI5	Not Available	53.52%
Matrix_385	DEAR4	Not Available	53.52%
Matrix_311	TGA1	Not Available	53.51%
Motif_72	GADOWNAT	Sequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABRE	53.51%
Matrix_176	MYB98	Not Available	53.50%
Matrix_274	EDF3	Not Available	53.35%
Matrix_81	YAB1	Not Available	53.32%
Motif_274	MYB1 binding site motif	Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein	53.24%
Matrix_293	WRKY38	Not Available	53.21%
Matrix_511	AT1G05805; AT1G35460; AT1G51140; AT2G42280; AT2G43140; AT4G09180	Not Available	53.18%
Matrix_122	ABF1; AREB2	Not Available	53.16%
Matrix_44	CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2	Not Available	53.14%
Matrix_469	NAC041; NAC083	Not Available	53.07%
Motif_643	DRE2COREZMRAB17	DRE2 core found in maize rab17 gene promoter; DBF1 and DBF2 bound to DRE2; rab17 is expressed during late embryogenesis, and is induced by ABA	53.05%
Matrix_480	BES1	Not Available	53.01%
Matrix_92	AT1G33760	Not Available	52.98%
Matrix_400	MYB46	MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes	52.94%
Motif_254	MYB46; MYB83	MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes	52.94%
Matrix_486	MYB83	MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes	52.94%
Matrix_55	PIF3	Not Available	52.85%
Matrix_484	ATERF13	Not Available	52.84%
Matrix_26	ATMYB3; MYB24	Not Available	52.83%
Motif_197	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	52.78%
Motif_665	ACEATCHS	ACEAtCHS (ACGT containing element) found in the LRU (light-responsive unit) in Arabidopsis chalcone synthase (CHS) gene promoter; Required for UV-B and UV-1/blue light responsiveness; Transcriptional repression by AtMYB4 controls production of UV-protecting sun screens in Arabidopsis; AtMYB4 mutant shows enhanced levels of sinapate ester in leaves and tolerance of UV-B irradiation; AtMYB4 expression is downregulated by exposure to UV-B light; Identification of UV/blue light-response elements in the Arabidopsis thaliana chalcone synthase promoter using a homologous protoplast transient expression system	52.74%
Motif_390	GLUTEBOX2OSGT2	Box II of rice glutelin Gt2 gene family; nuclear factor binding site	52.64%
Matrix_56	BZIP17; BZIP28; BZIP49	Not Available	52.62%
Motif_454	DRECRTCOREAT	Core motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower)	52.56%
Matrix_170	AT5G47660	Not Available	52.56%
Matrix_450	SPL7	Not Available	52.55%
Motif_69	CTRMCAMV35S	CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA	52.46%
Motif_288	NONAMERMOTIFTAH3H4	Nonamer motif found in promoter of wheat histone genes H3 and H4	52.43%
Matrix_233	MYC3	Not Available	52.38%
Matrix_394	DREB_U	Not Available	52.33%
Matrix_365	AT1G10120; AT1G25330; CIB5; AT1G68920; AT3G23690; CIB1	Not Available	52.31%
Matrix_261	ATERF-1	Not Available	52.30%
Matrix_374	AT5G07580; AT5G61590	Not Available	52.29%
Matrix_45	DRN	Not Available	52.29%
Motif_124	ABREMOTIFIIIOSRAB16B	Motif III found in the promoter of rice rab16B gene; Motif I and motif III are both required for ABA responsiveness; However, each can substitute for the other	52.23%
Motif_300	ACGTROOT1; HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. ACGT motif related to root expression; Gene: synthetic; perfect palindromic sequence (PA) containing G-box-related sequence; transacting factor: TAF-1; Binding of SGBF-1 (a Soybean G-box binding bZIP transcription factor) to ABRE is enhanced by SCOF-1 (a zinc finger protein ); Transcription of SCOF-1 is induced by low temperature and ABA	52.23%
Matrix_150	UNE10; PIF7	Not Available	52.22%
Motif_400	ABREAZMRAB28	ABA-responsive element (ABRE A) found at -148 to -139 in maize rab28; Maize rab28 is ABA-inducible in embryos and vegetative tissues	52.21%
Matrix_331	GBF1	Not Available	52.17%
Motif_295	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	52.08%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	52.00%
Matrix_193	RAV1	Not Available	51.96%
Matrix_265	NGA3	Not Available	51.96%
Matrix_111	ABF3	Not Available	51.95%
Matrix_367	REM1	Not Available	51.93%
Matrix_238	WRKY59; WRKY23; WRKY68	Not Available	51.88%
Matrix_500	WRKY43	Not Available	51.81%
Matrix_101	ERF5	Not Available	51.77%
Matrix_373	E2FE	Not Available	51.61%
Motif_310	ANAERO3CONSENSUS	One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO3CONSENSUS by the PLACEdb curator	51.61%
Matrix_316	WRKY15; WRKY39; WRKY7; WRKY74	Not Available	51.45%
Matrix_66	AtLEC2	Genes directly regulated by LEAFY COTYLEDON2 provide insight into the control of embryo maturation and somatic embryogenesis	51.44%
Matrix_454	AT1G77200; ATERF38; AT4G16750; AT5G52020	Not Available	51.37%
Motif_253	S1FSORPL21	S1F binding site (S1 site) in spinach (S.o.) RPL21 gene encoding the plastid ribosomal protein L21; Negative element; Might play a role in downregulating RPL21 promoter activity	51.33%
Matrix_287	ERF2	Not Available	51.29%
Motif_61	PALBOXLPC	Box L; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley; None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation	51.23%
Matrix_308	INO	Not Available	51.22%
Matrix_419	TGA9; PAN; TGA6; bZIP65	Not Available	51.10%
Matrix_249	WRKY11	Not Available	51.08%
Matrix_134	ABF1	Not Available	50.96%
Motif_95	UPRE2AT	XBP1 binding site-like sequence found in the plant UPRE (unfolded protein response element) in Arabidopsis thaliana;Either of ERSEII or XBP1 binding sites is essential and sufficient for the UPR	50.93%
Matrix_50	ATERF14; AT5G43410	Not Available	50.92%
Matrix_142	ZFP8	Not Available	50.86%
Matrix_360	ORA59	Not Available	50.82%
Motif_325	WRKY18	Identification of genes encoding receptor-like protein kinases as possible targets of pathogen- and salicylic acid-induced WRKY DNA-binding proteins in Arabidopsis	50.80%
Motif_166	RAP2.2	Transcription factor RAP2.2 and its interacting partner SINAT2: stable elements in the carotenogenesis of Arabidopsis leaves	50.80%
Matrix_211	MYB3	Not Available	50.76%
Matrix_295	ERF1	Not Available	50.74%
Motif_627	ACGTABREMOTIFA2OSEM	Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis	50.68%
Matrix_437	MYC2	Not Available	50.67%
Matrix_84	AtGRF6	Not Available	50.65%
Motif_415	RBCSGBOXPS	rbcS G-box; 5'upstream region (-211) of pea rbcS gene; binding with trans factor GBF (CG-1); Light-responsiveness	50.56%
Matrix_476	bHLH115; bHLH34	Not Available	50.55%
Matrix_344	ATERF15; AT4G18450	Not Available	50.55%
Motif_473	ABREOSRGA1	ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxia	50.46%
Matrix_207	WRKY10; WRKY57; AT2G44745; ATWRKY13; WRKY49	Not Available	50.43%
Motif_53	ABREA2HVA1	A2 of ABRC3; ABRC3 (ABA response complex 3) of HVA1 consists of CE3 and A2; ABA responsive element; stress response; Found in barley HVA1 gene encoding a class 3 late embryogenesis-abundant (Lea) protein; ABRC1 OF HVA22 consists of CE1 and A3	50.39%
Matrix_180	SPL1	Not Available	50.35%
Matrix_7	PIF4	Not Available	50.35%
Matrix_146	ORA47	Not Available	50.35%
Matrix_343	AT2G33710	Not Available	50.35%
Matrix_90	BEE1; BEE3; AT3G07340; AT5G48560; AT5G50915	Not Available	50.34%
Matrix_147	ERF3; AT1G80580	Not Available	50.27%
Matrix_166	TGA4	Not Available	50.23%
Matrix_430	TOE2	Not Available	50.20%
Matrix_446	LBD16	Not Available	50.18%
Matrix_504	WRKY40	Not Available	50.16%
Matrix_314	WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52	Not Available	50.00%