Child GO terms

Original GO term
GO:1901362
Description
organic cyclic compound biosynthetic process
Type
BP

GO description genes species ath atr cmi gbi gmo osa pab pgl pme ppa ppi psi psy pta ptr tba
GO:0034654 nucleobase-containing compound biosynthetic process 23328 16 3453 1220 519 599 580 1991 1325 804 2284 1633 1612 570 1036 2074 2913 715
GO:0032774 RNA biosynthetic process 20530 16 3070 1086 426 500 480 1786 1214 690 1998 1426 1306 469 912 1926 2627 614
GO:0006351 transcription, DNA-templated 20489 16 3065 1084 423 497 478 1784 1211 688 1995 1423 1304 468 910 1921 2624 614
GO:2001141 regulation of RNA biosynthetic process 17649 16 2750 963 322 395 355 1628 1052 561 1610 1260 1021 387 772 1678 2420 475
GO:0006355 regulation of transcription, DNA-dependent 17643 16 2748 963 322 395 355 1628 1052 561 1610 1259 1021 387 772 1678 2417 475
GO:1901293 nucleoside phosphate biosynthetic process 2479 16 411 120 80 86 84 184 96 98 241 185 255 83 101 111 259 85
GO:0009165 nucleotide biosynthetic process 2468 16 410 118 80 86 84 182 95 98 241 183 255 83 100 111 257 85
GO:0072522 purine-containing compound biosynthetic process 1763 16 155 85 51 66 56 126 78 69 180 130 221 76 78 131 204 57
GO:0009260 ribonucleotide biosynthetic process 1520 16 255 78 42 54 41 112 58 55 136 121 160 56 55 68 183 46
GO:0006164 purine nucleotide biosynthetic process 1474 16 144 79 42 55 44 110 63 57 150 117 173 59 59 89 186 47
GO:0042455 ribonucleoside biosynthetic process 1433 16 109 76 46 57 41 113 67 53 137 117 189 63 65 95 158 47
GO:0009163 nucleoside biosynthetic process 1433 16 109 76 46 57 41 113 67 53 137 117 189 63 65 95 158 47
GO:0009152 purine ribonucleotide biosynthetic process 1302 16 118 73 35 51 37 103 57 52 126 110 154 54 52 65 174 41
GO:0042451 purine nucleoside biosynthetic process 1293 16 95 69 35 52 36 102 63 47 120 102 181 59 59 91 144 38
GO:0046129 purine ribonucleoside biosynthetic process 1293 16 95 69 35 52 36 102 63 47 120 102 181 59 59 91 144 38
GO:0009124 nucleoside monophosphate biosynthetic process 1176 16 103 68 38 44 35 102 39 49 136 108 119 46 52 58 138 41
GO:0009156 ribonucleoside monophosphate biosynthetic process 1129 16 97 66 36 42 34 98 38 48 123 105 117 45 51 57 132 40
GO:0045892 negative regulation of transcription, DNA-dependent 1075 16 428 98 7 10 7 125 7 14 21 123 18 13 11 5 179 9
GO:0045893 positive regulation of transcription, DNA-dependent 1064 16 513 102 2 1 2 101 1 1 8 90 6 3 4 2 225 3
GO:0006366 transcription from RNA polymerase II promoter 1021 16 91 45 40 42 39 52 49 55 149 76 83 38 43 103 69 47
GO:0009127 purine nucleoside monophosphate biosynthetic process 993 16 81 60 27 38 28 86 35 41 106 90 108 42 46 52 121 32
GO:0009168 purine ribonucleoside monophosphate biosynthetic process 993 16 81 60 27 38 28 86 35 41 106 90 108 42 46 52 121 32
GO:0009142 nucleoside triphosphate biosynthetic process 925 16 70 54 21 35 24 80 39 36 82 80 129 43 41 54 112 25
GO:0009201 ribonucleoside triphosphate biosynthetic process 918 16 69 53 21 35 24 79 39 36 82 79 127 43 41 54 111 25
GO:0009206 purine ribonucleoside triphosphate biosynthetic process 913 16 64 53 21 35 24 79 39 36 82 79 127 43 41 54 111 25
GO:0009145 purine nucleoside triphosphate biosynthetic process 913 16 64 53 21 35 24 79 39 36 82 79 127 43 41 54 111 25
GO:0033014 tetrapyrrole biosynthetic process 872 16 170 65 32 31 24 69 32 27 69 97 34 20 38 29 105 30
GO:0072528 pyrimidine-containing compound biosynthetic process 853 16 177 27 30 36 32 43 48 41 87 53 84 31 30 42 60 32
GO:0006352 DNA-dependent transcription, initiation 813 16 57 46 34 42 34 55 52 29 116 51 78 27 34 42 79 37
GO:0006754 ATP biosynthetic process 768 16 55 47 18 29 18 71 27 28 74 69 92 35 37 45 102 21
GO:0009073 aromatic amino acid family biosynthetic process 742 16 106 33 25 29 23 52 72 42 75 55 41 27 32 47 58 25
GO:0006694 steroid biosynthetic process 707 16 239 35 6 14 11 42 38 9 29 37 26 8 10 29 164 10
GO:0006779 porphyrin-containing compound biosynthetic process 702 16 164 57 20 23 14 62 23 18 41 89 23 11 25 20 93 19
GO:0015986 ATP synthesis coupled proton transport 633 16 43 39 16 26 16 59 22 28 69 43 88 34 34 45 54 17
GO:0006221 pyrimidine nucleotide biosynthetic process 601 16 164 18 21 21 20 30 23 28 58 30 72 20 19 19 36 22
GO:0006357 regulation of transcription from RNA polymerase II promoter 560 16 35 29 18 22 22 31 28 25 89 53 43 20 23 51 42 29
GO:0006354 DNA-dependent transcription, elongation 434 16 132 10 14 17 12 14 7 18 50 12 31 15 13 55 16 18
GO:0015995 chlorophyll biosynthetic process 412 16 139 33 4 7 1 49 8 5 9 62 8 4 7 3 67 6
GO:0006342 chromatin silencing 408 16 254 26 2 2 1 33 1 3 2 41 1 2 1 1 36 2
GO:0042435 indole-containing compound biosynthetic process 405 16 194 28 4 4 2 36 1 3 8 31 4 2 5 2 75 6
GO:0009699 phenylpropanoid biosynthetic process 402 5 151 41 0 0 0 59 0 0 0 52 0 0 0 0 99 0
GO:0072525 pyridine-containing compound biosynthetic process 384 16 23 21 15 16 24 23 29 18 35 31 37 14 24 26 30 18
GO:0042559 pteridine-containing compound biosynthetic process 378 16 23 19 12 12 15 14 36 22 42 22 35 14 15 57 24 16
GO:0009220 pyrimidine ribonucleotide biosynthetic process 370 16 149 11 10 9 10 17 13 11 20 21 41 10 7 12 19 10
GO:0009396 folic acid-containing compound biosynthetic process 320 16 21 17 10 9 13 13 34 15 30 19 27 10 12 56 20 14
GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway 265 16 11 11 10 11 4 20 33 19 41 14 15 16 16 20 15 9
GO:0016126 sterol biosynthetic process 255 6 174 15 0 0 0 17 0 0 0 19 1 0 0 0 29 0
GO:0006367 transcription initiation from RNA polymerase II promoter 255 16 15 13 11 14 9 17 19 14 36 18 21 11 11 14 23 9
GO:0046112 nucleobase biosynthetic process 245 16 17 10 8 13 12 18 13 13 30 18 19 11 15 17 20 11
GO:0046134 pyrimidine nucleoside biosynthetic process 243 16 23 11 10 9 10 17 13 11 20 21 41 10 7 12 18 10
GO:0046132 pyrimidine ribonucleoside biosynthetic process 243 16 23 11 10 9 10 17 13 11 20 21 41 10 7 12 18 10
GO:0009697 salicylic acid biosynthetic process 242 5 211 7 0 0 0 6 0 0 0 6 0 0 0 0 12 0
GO:0019363 pyridine nucleotide biosynthetic process 239 16 13 14 11 10 19 16 15 10 23 20 26 6 15 6 21 14
GO:0019359 nicotinamide nucleotide biosynthetic process 232 16 12 12 11 10 19 15 15 10 22 19 26 6 15 6 20 14
GO:0042727 flavin-containing compound biosynthetic process 215 16 12 12 9 8 14 12 15 12 19 17 21 9 8 17 19 11
GO:0009231 riboflavin biosynthetic process 215 16 12 12 9 8 14 12 15 12 19 17 21 9 8 17 19 11
GO:0009094 L-phenylalanine biosynthetic process 197 16 9 6 7 9 2 16 28 14 30 8 13 13 14 12 8 8
GO:0000105 histidine biosynthetic process 187 16 12 9 10 9 10 10 11 8 23 15 18 10 9 8 14 11
GO:1901070 guanosine-containing compound biosynthetic process 179 16 13 9 5 7 7 9 13 9 17 12 37 9 6 10 10 6
GO:0006368 transcription elongation from RNA polymerase II promoter 177 16 1 1 11 14 6 2 3 14 36 3 15 9 7 45 2 8
GO:0009809 lignin biosynthetic process 176 5 58 19 0 0 0 29 0 0 0 18 0 0 0 0 52 0
GO:0009684 indoleacetic acid biosynthetic process 175 5 122 7 0 0 0 10 0 0 0 11 0 0 0 0 25 0
GO:0006188 IMP biosynthetic process 173 16 16 8 7 8 9 11 6 12 22 17 14 6 6 6 16 9
GO:0009226 nucleotide-sugar biosynthetic process 166 16 41 11 4 5 4 29 2 3 6 19 8 4 5 3 18 4
GO:0031048 chromatin silencing by small RNA 165 5 119 11 0 0 0 11 0 0 0 14 0 0 0 0 10 0
GO:0016129 phytosteroid biosynthetic process 164 5 119 10 0 0 0 11 0 0 0 4 0 0 0 0 20 0
GO:0016132 brassinosteroid biosynthetic process 159 5 118 9 0 0 0 10 0 0 0 4 0 0 0 0 18 0
GO:0006783 heme biosynthetic process 159 16 40 12 5 7 7 17 5 4 10 12 6 1 6 8 15 4
GO:0032784 regulation of DNA-dependent transcription, elongation 153 16 9 5 4 8 7 5 7 7 24 8 19 8 7 14 10 11
GO:0006346 methylation-dependent chromatin silencing 152 5 124 6 0 0 0 6 0 0 0 8 0 0 0 0 8 0
GO:0009148 pyrimidine nucleoside triphosphate biosynthetic process 152 16 14 6 3 6 6 8 12 8 8 10 37 8 4 9 9 4
GO:0006556 S-adenosylmethionine biosynthetic process 151 16 4 2 5 5 3 5 11 5 10 5 34 8 11 32 8 3
GO:0006241 CTP biosynthetic process 150 16 14 6 3 6 6 8 12 8 8 10 35 8 4 9 9 4
GO:0009209 pyrimidine ribonucleoside triphosphate biosynthetic process 150 16 14 6 3 6 6 8 12 8 8 10 35 8 4 9 9 4
GO:0019856 pyrimidine nucleobase biosynthetic process 147 16 7 6 6 11 8 8 10 8 17 13 13 5 9 7 12 7
GO:0032324 molybdopterin cofactor biosynthetic process 146 16 9 8 8 5 6 9 12 7 16 8 12 7 8 17 9 5
GO:0006228 UTP biosynthetic process 145 16 9 6 3 6 6 8 12 8 8 10 35 8 4 9 9 4
GO:0006165 nucleoside diphosphate phosphorylation 145 16 9 6 3 6 6 8 12 8 8 10 35 8 4 9 9 4
GO:0006183 GTP biosynthetic process 145 16 9 6 3 6 6 8 12 8 8 10 35 8 4 9 9 4
GO:0042819 vitamin B6 biosynthetic process 145 16 10 7 4 6 5 7 14 8 12 11 11 8 9 20 9 4
GO:0009130 pyrimidine nucleoside monophosphate biosynthetic process 141 16 19 6 9 5 5 13 2 4 25 13 8 3 4 4 14 7
GO:0009435 NAD biosynthetic process 137 16 8 7 6 2 13 9 7 5 13 12 19 5 10 2 12 7
GO:0006777 Mo-molybdopterin cofactor biosynthetic process 133 16 9 8 5 5 5 9 9 7 12 8 11 6 8 17 9 5
GO:0042724 thiamine-containing compound biosynthetic process 133 16 9 5 4 6 4 9 13 5 17 16 5 6 4 9 16 5
GO:0009228 thiamine biosynthetic process 133 16 9 5 4 6 4 9 13 5 17 16 5 6 4 9 16 5
GO:0000162 tryptophan biosynthetic process 129 16 27 10 4 4 2 12 1 3 8 15 4 2 5 2 24 6
GO:0033866 nucleoside bisphosphate biosynthetic process 129 16 15 8 5 7 3 10 11 3 11 10 11 4 3 4 19 5
GO:0015937 coenzyme A biosynthetic process 129 16 15 8 5 7 3 10 11 3 11 10 11 4 3 4 19 5
GO:0046219 indolalkylamine biosynthetic process 129 16 27 10 4 4 2 12 1 3 8 15 4 2 5 2 24 6
GO:0034030 ribonucleoside bisphosphate biosynthetic process 129 16 15 8 5 7 3 10 11 3 11 10 11 4 3 4 19 5
GO:0034033 purine nucleoside bisphosphate biosynthetic process 129 16 15 8 5 7 3 10 11 3 11 10 11 4 3 4 19 5
GO:0043101 purine-containing compound salvage 127 16 10 4 5 8 10 9 1 8 14 6 17 10 7 2 8 8
GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process 123 16 6 5 5 7 7 7 8 7 15 12 12 4 8 4 10 6
GO:0006561 proline biosynthetic process 118 16 9 7 6 6 6 9 6 8 20 6 9 5 3 3 11 4
GO:0043173 nucleotide salvage 118 15 17 5 7 5 6 7 0 6 15 7 13 4 7 4 6 9
GO:0042793 transcription from plastid promoter 104 5 72 7 0 0 0 8 0 0 0 9 0 0 0 0 8 0
GO:0006189 'de novo' IMP biosynthetic process 102 16 12 5 3 4 4 8 5 8 15 10 6 3 2 3 10 4
GO:0009113 purine nucleobase biosynthetic process 98 16 10 4 2 2 4 10 3 5 13 5 6 6 6 10 8 4
GO:0009107 lipoate biosynthetic process 98 16 7 6 6 4 5 7 3 4 10 9 5 5 5 8 10 4
GO:0010189 vitamin E biosynthetic process 98 15 10 8 1 1 2 10 0 6 12 12 9 3 1 14 8 1
GO:0006741 NADP biosynthetic process 95 16 4 5 5 8 6 6 8 5 9 7 7 1 5 4 8 7
GO:0006222 UMP biosynthetic process 94 16 13 4 7 3 4 9 1 3 12 10 6 2 3 3 8 6
GO:0009174 pyrimidine ribonucleoside monophosphate biosynthetic process 94 16 13 4 7 3 4 9 1 3 12 10 6 2 3 3 8 6
GO:0006383 transcription from RNA polymerase III promoter 93 16 3 4 3 4 8 4 4 2 23 3 10 3 5 4 5 8
GO:0009700 indole phytoalexin biosynthetic process 91 5 43 7 0 0 0 15 0 0 0 6 0 0 0 0 20 0
GO:0006571 tyrosine biosynthetic process 83 16 5 7 3 2 2 6 5 5 11 12 2 3 2 8 9 1
GO:1901601 strigolactone biosynthetic process 82 15 4 4 1 3 1 3 0 10 8 5 7 5 3 19 6 3
GO:1901336 lactone biosynthetic process 82 15 4 4 1 3 1 3 0 10 8 5 7 5 3 19 6 3
GO:0009263 deoxyribonucleotide biosynthetic process 82 16 10 5 3 3 2 7 1 4 17 6 7 3 2 1 9 2
GO:0009265 2'-deoxyribonucleotide biosynthetic process 81 16 9 5 3 3 2 7 1 4 17 6 7 3 2 1 9 2
GO:0010120 camalexin biosynthetic process 78 5 41 5 0 0 0 12 0 0 0 3 0 0 0 0 17 0
GO:1901463 regulation of tetrapyrrole biosynthetic process 76 5 18 11 0 0 0 15 0 0 0 18 0 0 0 0 14 0
GO:0046189 phenol-containing compound biosynthetic process 73 5 17 9 0 0 0 12 0 0 0 14 0 0 0 0 21 0
GO:0009221 pyrimidine deoxyribonucleotide biosynthetic process 71 16 7 3 3 3 2 5 1 4 17 4 7 3 2 1 7 2
GO:0010380 regulation of chlorophyll biosynthetic process 71 5 17 10 0 0 0 14 0 0 0 17 0 0 0 0 13 0
GO:0008655 pyrimidine-containing compound salvage 70 15 9 4 5 2 3 4 0 3 9 8 6 1 3 2 5 6
GO:0006353 DNA-dependent transcription, termination 65 16 9 6 3 2 1 4 4 3 4 4 5 2 4 1 11 2
GO:0009805 coumarin biosynthetic process 63 5 54 2 0 0 0 2 0 0 0 2 0 0 0 0 3 0
GO:0019745 pentacyclic triterpenoid biosynthetic process 60 5 42 1 0 0 0 1 0 0 0 1 0 0 0 0 15 0
GO:0006729 tetrahydrobiopterin biosynthetic process 58 16 2 2 2 3 2 1 2 7 12 3 8 4 3 1 4 2
GO:0051090 regulation of sequence-specific DNA binding transcription factor activity 57 15 8 6 1 1 1 7 1 1 5 8 1 0 1 3 12 1
GO:0032786 positive regulation of DNA-dependent transcription, elongation 57 16 2 2 2 6 2 1 3 5 11 2 7 4 1 4 3 2
GO:0006166 purine ribonucleoside salvage 55 15 5 2 2 4 5 3 1 2 7 5 7 3 2 0 4 3
GO:0043174 nucleoside salvage 55 15 5 2 2 4 5 3 1 2 7 5 7 3 2 0 4 3
GO:0071897 DNA biosynthetic process 55 14 4 3 1 1 5 2 0 2 18 2 3 0 4 4 2 4
GO:0009298 GDP-mannose biosynthetic process 53 16 6 1 2 4 3 8 1 2 5 2 6 3 3 2 2 3
GO:0009759 indole glucosinolate biosynthetic process 53 4 19 5 0 0 0 1 0 0 0 0 0 0 0 0 28 0
GO:0006359 regulation of transcription from RNA polymerase III promoter 50 16 1 1 2 3 4 1 3 1 12 2 6 2 3 3 1 5
GO:0010345 suberin biosynthetic process 50 5 16 8 0 0 0 7 0 0 0 3 0 0 0 0 16 0
GO:0008615 pyridoxine biosynthetic process 48 15 7 5 1 1 1 5 0 1 3 8 2 3 2 1 7 1
GO:0030418 nicotianamine biosynthetic process 48 12 5 2 0 0 0 3 9 6 1 1 7 2 2 4 6 0
GO:0009157 deoxyribonucleoside monophosphate biosynthetic process 47 16 6 2 2 2 1 4 1 1 13 3 2 1 1 1 6 1
GO:0010138 pyrimidine ribonucleotide salvage 47 15 6 1 4 2 2 2 0 2 8 4 4 1 2 2 2 5
GO:0009177 pyrimidine deoxyribonucleoside monophosphate biosynthetic process 47 16 6 2 2 2 1 4 1 1 13 3 2 1 1 1 6 1
GO:0044206 UMP salvage 47 15 6 1 4 2 2 2 0 2 8 4 4 1 2 2 2 5
GO:0032262 pyrimidine nucleotide salvage 47 15 6 1 4 2 2 2 0 2 8 4 4 1 2 2 2 5
GO:0009190 cyclic nucleotide biosynthetic process 46 5 13 0 0 0 0 0 0 0 1 3 2 0 0 0 27 0
GO:0006231 dTMP biosynthetic process 45 16 5 2 2 2 1 3 1 1 13 3 2 1 1 1 6 1
GO:0008616 queuosine biosynthetic process 45 15 0 2 4 2 1 2 3 3 7 4 2 2 3 1 5 4
GO:0046654 tetrahydrofolate biosynthetic process 44 16 6 3 2 1 1 3 2 3 3 4 3 3 2 1 4 3
GO:0032261 purine nucleotide salvage 44 12 7 0 3 3 4 1 0 3 5 0 7 2 3 2 0 4
GO:0009229 thiamine diphosphate biosynthetic process 43 16 4 1 1 1 2 4 4 4 2 2 2 2 2 8 2 2
GO:0034243 regulation of transcription elongation from RNA polymerase II promoter 43 16 1 1 1 5 1 2 3 3 10 3 3 2 1 4 2 1
GO:0052652 cyclic purine nucleotide metabolic process 40 3 13 0 0 0 0 0 0 0 0 1 0 0 0 0 26 0
GO:0009807 lignan biosynthetic process 40 4 16 4 0 0 0 10 0 0 0 0 0 0 0 0 10 0
GO:0006182 cGMP biosynthetic process 39 2 13 0 0 0 0 0 0 0 0 0 0 0 0 0 26 0
GO:0006269 DNA replication, synthesis of RNA primer 39 15 3 2 3 3 2 2 3 2 3 3 2 1 2 5 3 0
GO:0032264 IMP salvage 39 12 2 0 3 3 4 1 0 3 5 0 7 2 3 2 0 4
GO:0031935 regulation of chromatin silencing 35 5 14 4 0 0 0 5 0 0 0 6 0 0 0 0 6 0
GO:0006168 adenine salvage 35 13 6 2 0 1 1 5 0 3 2 1 2 5 2 0 4 1
GO:0043096 purine nucleobase salvage 35 13 6 2 0 1 1 5 0 3 2 1 2 5 2 0 4 1
GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter 35 13 0 0 1 5 1 0 3 3 9 1 3 2 1 4 1 1
GO:0046084 adenine biosynthetic process 35 13 6 2 0 1 1 5 0 3 2 1 2 5 2 0 4 1
GO:0010023 proanthocyanidin biosynthetic process 35 5 8 5 0 0 0 3 0 0 0 9 0 0 0 0 10 0
GO:0006177 GMP biosynthetic process 34 16 4 3 2 1 1 1 1 1 9 2 2 1 2 1 1 2
GO:0009236 cobalamin biosynthetic process 34 16 3 3 1 1 2 3 1 1 2 5 2 2 1 1 5 1
GO:0009102 biotin biosynthetic process 32 15 3 3 1 1 1 4 0 2 1 4 3 1 2 1 4 1
GO:0044205 'de novo' UMP biosynthetic process 32 16 6 1 1 1 1 6 1 1 4 2 2 1 1 1 2 1
GO:0019985 translesion synthesis 31 12 3 3 0 0 4 2 0 1 5 2 2 0 2 2 2 3
GO:0010024 phytochromobilin biosynthetic process 31 15 4 3 1 1 1 3 1 1 2 4 1 1 1 0 5 2
GO:0016480 negative regulation of transcription from RNA polymerase III promoter 30 16 1 1 1 2 2 1 2 1 8 2 4 1 1 1 1 1
GO:0043620 regulation of DNA-dependent transcription in response to stress 27 5 5 2 0 0 0 4 0 0 0 6 0 0 0 0 10 0
GO:0042350 GDP-L-fucose biosynthetic process 27 15 5 3 1 1 1 4 1 1 0 2 1 1 1 1 3 1
GO:0010263 tricyclic triterpenoid biosynthetic process 26 5 11 1 0 0 0 1 0 0 0 1 0 0 0 0 12 0
GO:0009715 chalcone biosynthetic process 25 5 1 1 0 0 0 2 0 0 0 17 0 0 0 0 4 0
GO:0006784 heme a biosynthetic process 24 15 1 3 1 2 1 1 2 1 3 1 1 0 1 2 2 2
GO:0006782 protoporphyrinogen IX biosynthetic process 24 2 15 0 0 0 0 9 0 0 0 0 0 0 0 0 0 0
GO:0043433 negative regulation of sequence-specific DNA binding transcription factor activity 24 5 5 4 0 0 0 5 0 0 0 3 0 0 0 0 7 0
GO:0006348 chromatin silencing at telomere 23 16 1 1 2 2 1 1 1 3 2 1 1 2 1 1 1 2
GO:0042777 plasma membrane ATP synthesis coupled proton transport 23 4 4 4 0 0 0 11 0 0 0 0 0 0 0 0 4 0
GO:0009133 nucleoside diphosphate biosynthetic process 23 14 1 1 1 1 1 1 0 3 5 1 3 2 1 0 1 1
GO:0070919 production of siRNA involved in chromatin silencing by small RNA 22 5 3 6 0 0 0 4 0 0 0 5 0 0 0 0 4 0
GO:1901599 (-)-pinoresinol biosynthetic process 22 4 5 2 0 0 0 7 0 0 0 0 0 0 0 0 8 0
GO:0006233 dTDP biosynthetic process 22 14 1 1 1 1 1 1 0 3 4 1 3 2 1 0 1 1
GO:0042351 'de novo' GDP-L-fucose biosynthetic process 22 15 4 2 1 1 1 3 1 1 0 1 1 1 1 1 2 1
GO:0009139 pyrimidine nucleoside diphosphate biosynthetic process 22 14 1 1 1 1 1 1 0 3 4 1 3 2 1 0 1 1
GO:0009197 pyrimidine deoxyribonucleoside diphosphate biosynthetic process 22 14 1 1 1 1 1 1 0 3 4 1 3 2 1 0 1 1
GO:0009189 deoxyribonucleoside diphosphate biosynthetic process 22 14 1 1 1 1 1 1 0 3 4 1 3 2 1 0 1 1
GO:0010686 tetracyclic triterpenoid biosynthetic process 22 2 10 0 0 0 0 0 0 0 0 0 0 0 0 0 12 0
GO:0019365 pyridine nucleotide salvage 22 10 3 3 0 0 0 3 0 1 2 2 2 1 2 0 3 0
GO:0042776 mitochondrial ATP synthesis coupled proton transport 21 5 5 2 0 0 0 6 0 0 0 3 0 0 0 0 5 0
GO:0043100 pyrimidine nucleobase salvage 19 12 2 2 1 0 1 2 0 1 1 3 2 0 1 0 2 1
GO:0048034 heme O biosynthetic process 18 12 2 2 1 0 1 2 0 1 1 2 1 0 2 1 2 0
GO:0006065 UDP-glucuronate biosynthetic process 18 5 4 1 0 0 0 5 0 0 0 4 0 0 0 0 4 0
GO:0010253 UDP-rhamnose biosynthetic process 18 5 4 2 0 0 0 2 0 0 0 6 0 0 0 0 4 0
GO:0043618 regulation of transcription from RNA polymerase II promoter in response to stress 17 5 3 2 0 0 0 2 0 0 0 5 0 0 0 0 5 0
GO:0009202 deoxyribonucleoside triphosphate biosynthetic process 17 6 3 3 0 0 0 3 0 0 0 3 2 0 0 0 3 0
GO:0006384 transcription initiation from RNA polymerase III promoter 16 6 0 0 0 0 2 0 0 0 8 0 2 1 1 0 0 2
GO:1901141 regulation of lignin biosynthetic process 16 5 3 2 0 0 0 3 0 0 0 4 0 0 0 0 4 0
GO:0019357 nicotinate nucleotide biosynthetic process 16 10 2 1 0 0 0 2 0 1 2 1 2 1 2 0 2 0
GO:0019358 nicotinate nucleotide salvage 16 10 2 1 0 0 0 2 0 1 2 1 2 1 2 0 2 0
GO:0009303 rRNA transcription 15 7 3 2 0 0 0 2 0 0 1 4 0 1 0 0 2 0
GO:1901183 positive regulation of camalexin biosynthetic process 13 5 2 1 0 0 0 6 0 0 0 1 0 0 0 0 3 0
GO:1901182 regulation of camalexin biosynthetic process 13 5 2 1 0 0 0 6 0 0 0 1 0 0 0 0 3 0
GO:0006223 uracil salvage 13 12 1 1 1 0 1 1 0 1 1 1 2 0 1 0 1 1
GO:0006190 inosine salvage 13 9 0 0 1 2 2 0 0 1 2 0 2 1 1 0 0 1
GO:0080142 regulation of salicylic acid biosynthetic process 13 5 3 2 0 0 0 1 0 0 0 2 0 0 0 0 5 0
GO:0046103 inosine biosynthetic process 13 9 0 0 1 2 2 0 0 1 2 0 2 1 1 0 0 1
GO:0090030 regulation of steroid hormone biosynthetic process 12 4 3 1 0 0 0 2 0 0 0 0 0 0 0 0 6 0
GO:0090308 regulation of methylation-dependent chromatin silencing 12 5 6 1 0 0 0 1 0 0 0 2 0 0 0 0 2 0
GO:0090309 positive regulation of methylation-dependent chromatin silencing 12 5 6 1 0 0 0 1 0 0 0 2 0 0 0 0 2 0
GO:0031937 positive regulation of chromatin silencing 12 5 6 1 0 0 0 1 0 0 0 2 0 0 0 0 2 0
GO:0050810 regulation of steroid biosynthetic process 12 4 3 1 0 0 0 2 0 0 0 0 0 0 0 0 6 0
GO:0006344 maintenance of chromatin silencing 12 5 2 2 0 0 0 2 0 0 0 1 0 0 0 0 5 0
GO:0009299 mRNA transcription 12 5 4 2 0 0 0 1 0 0 0 2 0 0 0 0 3 0
GO:0010422 regulation of brassinosteroid biosynthetic process 12 4 3 1 0 0 0 2 0 0 0 0 0 0 0 0 6 0
GO:0019277 UDP-N-acetylgalactosamine biosynthetic process 12 9 1 1 1 0 0 1 0 0 1 4 1 0 1 0 1 0
GO:0006167 AMP biosynthetic process 11 5 6 1 0 0 0 2 0 0 0 1 0 0 0 0 1 0
GO:0042276 error-prone translesion synthesis 11 5 2 3 0 0 0 2 0 0 0 2 0 0 0 0 2 0
GO:2001295 malonyl-CoA biosynthetic process 11 4 5 1 0 0 0 2 0 0 0 0 0 0 0 0 3 0
GO:0000122 negative regulation of transcription from RNA polymerase II promoter 10 8 0 0 0 1 0 1 0 1 2 0 2 0 1 0 1 1
GO:2000029 regulation of proanthocyanidin biosynthetic process 10 5 2 2 0 0 0 1 0 0 0 1 0 0 0 0 4 0
GO:0006175 dATP biosynthetic process 10 5 2 2 0 0 0 2 0 0 0 2 0 0 0 0 2 0
GO:0006176 dATP biosynthetic process from ADP 10 5 2 2 0 0 0 2 0 0 0 2 0 0 0 0 2 0
GO:0045944 positive regulation of transcription from RNA polymerase II promoter 10 6 3 1 0 0 0 1 0 0 1 2 0 0 0 0 2 0
GO:0009216 purine deoxyribonucleoside triphosphate biosynthetic process 10 5 2 2 0 0 0 2 0 0 0 2 0 0 0 0 2 0
GO:0009153 purine deoxyribonucleotide biosynthetic process 10 5 2 2 0 0 0 2 0 0 0 2 0 0 0 0 2 0
GO:0019354 siroheme biosynthetic process 10 5 2 2 0 0 0 2 0 0 0 2 0 0 0 0 2 0
GO:0043619 regulation of transcription from RNA polymerase II promoter in response to oxidative stress 9 5 1 1 0 0 0 1 0 0 0 4 0 0 0 0 2 0
GO:0045990 carbon catabolite regulation of transcription 9 5 1 1 0 0 0 1 0 0 0 4 0 0 0 0 2 0
GO:0031554 regulation of DNA-dependent transcription, termination 9 7 2 1 0 0 0 0 2 0 1 0 1 0 1 0 1 0
GO:0006990 positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response 9 5 3 1 0 0 0 1 0 0 0 2 0 0 0 0 2 0
GO:0045013 carbon catabolite repression of transcription 9 5 1 1 0 0 0 1 0 0 0 4 0 0 0 0 2 0
GO:0045014 negative regulation of transcription by glucose 9 5 1 1 0 0 0 1 0 0 0 4 0 0 0 0 2 0
GO:1901522 positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus 9 5 3 1 0 0 0 1 0 0 0 2 0 0 0 0 2 0
GO:0006169 adenosine salvage 9 5 2 1 0 0 0 2 0 0 0 2 0 0 0 0 2 0
GO:0006048 UDP-N-acetylglucosamine biosynthetic process 9 2 6 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0
GO:0046086 adenosine biosynthetic process 9 5 2 1 0 0 0 2 0 0 0 2 0 0 0 0 2 0
GO:0046015 regulation of transcription by glucose 9 5 1 1 0 0 0 1 0 0 0 4 0 0 0 0 2 0
GO:0046901 tetrahydrofolylpolyglutamate biosynthetic process 9 5 2 1 0 0 0 2 0 0 0 2 0 0 0 0 2 0
GO:0090431 alkyl caffeate ester biosynthetic process 8 5 3 1 0 0 0 1 0 0 0 1 0 0 0 0 2 0
GO:1901695 tyramine biosynthetic process 8 5 1 1 0 0 0 1 0 0 0 4 0 0 0 0 1 0
GO:0033358 UDP-L-arabinose biosynthetic process 8 2 5 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0
GO:0061416 regulation of transcription from RNA polymerase II promoter in response to salt stress 8 5 2 1 0 0 0 1 0 0 0 1 0 0 0 0 3 0
GO:0061392 regulation of transcription from RNA polymerase II promoter in response to osmotic stress 8 5 2 1 0 0 0 1 0 0 0 1 0 0 0 0 3 0
GO:0009713 catechol-containing compound biosynthetic process 8 5 3 1 0 0 0 1 0 0 0 1 0 0 0 0 2 0
GO:0009802 cinnamic acid ester biosynthetic process 8 5 3 1 0 0 0 1 0 0 0 1 0 0 0 0 2 0
GO:0009800 cinnamic acid biosynthetic process 8 3 5 0 0 0 0 2 0 0 0 0 0 0 0 0 1 0
GO:0019305 dTDP-rhamnose biosynthetic process 8 5 2 1 0 0 0 1 0 0 0 2 0 0 0 0 2 0
GO:0031564 transcription antitermination 7 5 2 1 0 0 0 0 2 0 0 0 0 0 1 0 1 0
GO:0090032 negative regulation of steroid hormone biosynthetic process 7 4 1 1 0 0 0 2 0 0 0 0 0 0 0 0 3 0
GO:0031555 transcriptional attenuation 7 5 2 1 0 0 0 0 2 0 0 0 0 0 1 0 1 0
GO:0042794 rRNA transcription from plastid promoter 7 5 1 1 0 0 0 1 0 0 0 3 0 0 0 0 1 0
GO:0010423 negative regulation of brassinosteroid biosynthetic process 7 4 1 1 0 0 0 2 0 0 0 0 0 0 0 0 3 0
GO:0010894 negative regulation of steroid biosynthetic process 7 4 1 1 0 0 0 2 0 0 0 0 0 0 0 0 3 0
GO:0019428 allantoin biosynthetic process 7 7 1 1 0 0 0 1 0 0 1 1 1 0 0 0 1 0
GO:0033320 UDP-D-xylose biosynthetic process 6 1 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GO:1901928 cadinene biosynthetic process 6 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0
GO:0033468 CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process 6 5 1 1 0 0 0 1 0 0 0 1 0 0 0 0 2 0
GO:0008153 para-aminobenzoic acid biosynthetic process 6 5 2 1 0 0 0 1 0 0 0 1 0 0 0 0 1 0
GO:0080020 regulation of coenzyme A biosynthetic process 6 5 1 1 0 0 0 1 0 0 0 2 0 0 0 0 1 0
GO:0030808 regulation of nucleotide biosynthetic process 6 5 1 1 0 0 0 1 0 0 0 2 0 0 0 0 1 0
GO:1900371 regulation of purine nucleotide biosynthetic process 6 5 1 1 0 0 0 1 0 0 0 2 0 0 0 0 1 0
GO:0006696 ergosterol biosynthetic process 5 4 1 1 0 0 0 1 0 0 0 0 0 0 0 0 2 0
GO:0006780 uroporphyrinogen III biosynthetic process 5 5 1 1 0 0 0 1 0 0 0 1 0 0 0 0 1 0
GO:1901066 syringal lignin biosynthetic process 5 4 1 1 0 0 0 1 0 0 0 0 0 0 0 0 2 0
GO:1901464 negative regulation of tetrapyrrole biosynthetic process 5 5 1 1 0 0 0 1 0 0 0 1 0 0 0 0 1 0
GO:1901465 positive regulation of tetrapyrrole biosynthetic process 5 5 1 1 0 0 0 1 0 0 0 1 0 0 0 0 1 0
GO:1901428 regulation of syringal lignin biosynthetic process 5 4 1 1 0 0 0 1 0 0 0 0 0 0 0 0 2 0
GO:1901430 positive regulation of syringal lignin biosynthetic process 5 4 1 1 0 0 0 1 0 0 0 0 0 0 0 0 2 0
GO:0033398 zeatin biosynthetic process 5 3 2 0 0 0 0 0 0 0 0 1 0 0 0 0 2 0
GO:1901996 regulation of indoleacetic acid biosynthetic process via tryptophan 5 5 1 1 0 0 0 1 0 0 0 1 0 0 0 0 1 0
GO:1901997 negative regulation of indoleacetic acid biosynthetic process via tryptophan 5 5 1 1 0 0 0 1 0 0 0 1 0 0 0 0 1 0
GO:0070453 regulation of heme biosynthetic process 5 5 1 1 0 0 0 1 0 0 0 1 0 0 0 0 1 0
GO:0033466 trans-zeatin biosynthetic process 5 3 2 0 0 0 0 0 0 0 0 1 0 0 0 0 2 0
GO:0070455 positive regulation of heme biosynthetic process 5 5 1 1 0 0 0 1 0 0 0 1 0 0 0 0 1 0
GO:0055129 L-proline biosynthetic process 5 2 3 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0
GO:0042352 GDP-L-fucose salvage 5 5 1 1 0 0 0 1 0 0 0 1 0 0 0 0 1 0
GO:0042821 pyridoxal biosynthetic process 5 5 1 1 0 0 0 1 0 0 0 1 0 0 0 0 1 0
GO:1902325 negative regulation of chlorophyll biosynthetic process 5 5 1 1 0 0 0 1 0 0 0 1 0 0 0 0 1 0
GO:0009301 snRNA transcription 5 5 1 1 0 0 0 1 0 0 0 1 0 0 0 0 1 0
GO:0009304 tRNA transcription 5 5 1 1 0 0 0 1 0 0 0 1 0 0 0 0 1 0
GO:0009848 indoleacetic acid biosynthetic process via tryptophan 5 5 1 1 0 0 0 1 0 0 0 1 0 0 0 0 1 0
GO:0010964 regulation of chromatin silencing by small RNA 5 5 1 1 0 0 0 1 0 0 0 1 0 0 0 0 1 0
GO:0044209 AMP salvage 5 1 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GO:0044211 CTP salvage 5 1 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GO:0006695 cholesterol biosynthetic process 4 2 3 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
GO:0006557 S-adenosylmethioninamine biosynthetic process 4 2 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0
GO:0036172 thiamine salvage 4 4 1 1 0 0 0 0 0 0 0 1 0 0 0 0 1 0
GO:0042318 penicillin biosynthetic process 4 4 0 1 0 0 0 1 0 0 0 1 0 0 0 0 1 0
GO:0030654 beta-lactam antibiotic biosynthetic process 4 4 0 1 0 0 0 1 0 0 0 1 0 0 0 0 1 0
GO:0046109 uridine biosynthetic process 4 4 1 1 0 0 0 0 0 0 0 1 0 0 0 0 1 0
GO:0009710 tropane alkaloid biosynthetic process 4 4 1 0 0 0 0 1 0 0 0 1 0 0 0 0 1 0
GO:0044208 'de novo' AMP biosynthetic process 4 3 1 0 0 0 0 2 0 0 0 0 0 0 0 0 1 0
GO:0006360 transcription from RNA polymerase I promoter 3 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain 2 2 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
GO:0031936 negative regulation of chromatin silencing 2 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GO:0006226 dUMP biosynthetic process 2 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
GO:0006229 dUTP biosynthetic process 2 1 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0
GO:0015960 diadenosine polyphosphate biosynthetic process 2 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GO:0015966 diadenosine tetraphosphate biosynthetic process 2 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GO:0009212 pyrimidine deoxyribonucleoside triphosphate biosynthetic process 2 1 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0
GO:0009257 10-formyltetrahydrofolate biosynthetic process 2 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GO:0046656 folic acid biosynthetic process 2 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GO:0006587 serotonin biosynthetic process from tryptophan 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
GO:0006588 activation of tryptophan 5-monooxygenase activity 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
GO:0000183 chromatin silencing at rDNA 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GO:0097056 selenocysteinyl-tRNA(Sec) biosynthetic process 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GO:0006238 CMP salvage 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
GO:0006171 cAMP biosynthetic process 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
GO:0006172 ADP biosynthetic process 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
GO:0006178 guanine salvage 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GO:0018189 pyrroloquinoline quinone biosynthetic process 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
GO:0006369 termination of RNA polymerase II transcription 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
GO:0042427 serotonin biosynthetic process 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
GO:0030466 chromatin silencing at silent mating-type cassette 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
GO:0032785 negative regulation of DNA-dependent transcription, elongation 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
GO:0052699 ergothioneine biosynthetic process 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
GO:2000488 positive regulation of brassinosteroid biosynthetic process 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GO:1902006 negative regulation of proline biosynthetic process 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GO:1902005 regulation of proline biosynthetic process 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GO:0052703 cellular modified histidine biosynthetic process 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
GO:0052837 thiazole biosynthetic process 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GO:0009224 CMP biosynthetic process 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
GO:0034244 negative regulation of transcription elongation from RNA polymerase II promoter 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
GO:0046099 guanine biosynthetic process 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GO:0000731 DNA synthesis involved in DNA repair 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GO:0009136 purine nucleoside diphosphate biosynthetic process 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
GO:0009188 ribonucleoside diphosphate biosynthetic process 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
GO:0009180 purine ribonucleoside diphosphate biosynthetic process 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
GO:0010893 positive regulation of steroid biosynthetic process 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GO:0032263 GMP salvage 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0