GO |
description |
genes |
species |
ath |
atr |
cmi |
gbi |
gmo |
osa |
pab |
pgl |
pme |
ppa |
ppi |
psi |
psy |
pta |
ptr |
tba |
GO:0032774 |
RNA biosynthetic process |
20530 |
16 |
3070 |
1086 |
426 |
500 |
480 |
1786 |
1214 |
690 |
1998 |
1426 |
1306 |
469 |
912 |
1926 |
2627 |
614 |
GO:0006351 |
transcription, DNA-templated |
20489 |
16 |
3065 |
1084 |
423 |
497 |
478 |
1784 |
1211 |
688 |
1995 |
1423 |
1304 |
468 |
910 |
1921 |
2624 |
614 |
GO:2001141 |
regulation of RNA biosynthetic process |
17649 |
16 |
2750 |
963 |
322 |
395 |
355 |
1628 |
1052 |
561 |
1610 |
1260 |
1021 |
387 |
772 |
1678 |
2420 |
475 |
GO:0006355 |
regulation of transcription, DNA-dependent |
17643 |
16 |
2748 |
963 |
322 |
395 |
355 |
1628 |
1052 |
561 |
1610 |
1259 |
1021 |
387 |
772 |
1678 |
2417 |
475 |
GO:1901293 |
nucleoside phosphate biosynthetic process |
2479 |
16 |
411 |
120 |
80 |
86 |
84 |
184 |
96 |
98 |
241 |
185 |
255 |
83 |
101 |
111 |
259 |
85 |
GO:0009165 |
nucleotide biosynthetic process |
2468 |
16 |
410 |
118 |
80 |
86 |
84 |
182 |
95 |
98 |
241 |
183 |
255 |
83 |
100 |
111 |
257 |
85 |
GO:0009260 |
ribonucleotide biosynthetic process |
1520 |
16 |
255 |
78 |
42 |
54 |
41 |
112 |
58 |
55 |
136 |
121 |
160 |
56 |
55 |
68 |
183 |
46 |
GO:0006164 |
purine nucleotide biosynthetic process |
1474 |
16 |
144 |
79 |
42 |
55 |
44 |
110 |
63 |
57 |
150 |
117 |
173 |
59 |
59 |
89 |
186 |
47 |
GO:0009163 |
nucleoside biosynthetic process |
1433 |
16 |
109 |
76 |
46 |
57 |
41 |
113 |
67 |
53 |
137 |
117 |
189 |
63 |
65 |
95 |
158 |
47 |
GO:0042455 |
ribonucleoside biosynthetic process |
1433 |
16 |
109 |
76 |
46 |
57 |
41 |
113 |
67 |
53 |
137 |
117 |
189 |
63 |
65 |
95 |
158 |
47 |
GO:0009152 |
purine ribonucleotide biosynthetic process |
1302 |
16 |
118 |
73 |
35 |
51 |
37 |
103 |
57 |
52 |
126 |
110 |
154 |
54 |
52 |
65 |
174 |
41 |
GO:0042451 |
purine nucleoside biosynthetic process |
1293 |
16 |
95 |
69 |
35 |
52 |
36 |
102 |
63 |
47 |
120 |
102 |
181 |
59 |
59 |
91 |
144 |
38 |
GO:0046129 |
purine ribonucleoside biosynthetic process |
1293 |
16 |
95 |
69 |
35 |
52 |
36 |
102 |
63 |
47 |
120 |
102 |
181 |
59 |
59 |
91 |
144 |
38 |
GO:0009124 |
nucleoside monophosphate biosynthetic process |
1176 |
16 |
103 |
68 |
38 |
44 |
35 |
102 |
39 |
49 |
136 |
108 |
119 |
46 |
52 |
58 |
138 |
41 |
GO:0009156 |
ribonucleoside monophosphate biosynthetic process |
1129 |
16 |
97 |
66 |
36 |
42 |
34 |
98 |
38 |
48 |
123 |
105 |
117 |
45 |
51 |
57 |
132 |
40 |
GO:0045892 |
negative regulation of transcription, DNA-dependent |
1075 |
16 |
428 |
98 |
7 |
10 |
7 |
125 |
7 |
14 |
21 |
123 |
18 |
13 |
11 |
5 |
179 |
9 |
GO:0045893 |
positive regulation of transcription, DNA-dependent |
1064 |
16 |
513 |
102 |
2 |
1 |
2 |
101 |
1 |
1 |
8 |
90 |
6 |
3 |
4 |
2 |
225 |
3 |
GO:0006366 |
transcription from RNA polymerase II promoter |
1021 |
16 |
91 |
45 |
40 |
42 |
39 |
52 |
49 |
55 |
149 |
76 |
83 |
38 |
43 |
103 |
69 |
47 |
GO:0009127 |
purine nucleoside monophosphate biosynthetic process |
993 |
16 |
81 |
60 |
27 |
38 |
28 |
86 |
35 |
41 |
106 |
90 |
108 |
42 |
46 |
52 |
121 |
32 |
GO:0009168 |
purine ribonucleoside monophosphate biosynthetic process |
993 |
16 |
81 |
60 |
27 |
38 |
28 |
86 |
35 |
41 |
106 |
90 |
108 |
42 |
46 |
52 |
121 |
32 |
GO:0009142 |
nucleoside triphosphate biosynthetic process |
925 |
16 |
70 |
54 |
21 |
35 |
24 |
80 |
39 |
36 |
82 |
80 |
129 |
43 |
41 |
54 |
112 |
25 |
GO:0009201 |
ribonucleoside triphosphate biosynthetic process |
918 |
16 |
69 |
53 |
21 |
35 |
24 |
79 |
39 |
36 |
82 |
79 |
127 |
43 |
41 |
54 |
111 |
25 |
GO:0009145 |
purine nucleoside triphosphate biosynthetic process |
913 |
16 |
64 |
53 |
21 |
35 |
24 |
79 |
39 |
36 |
82 |
79 |
127 |
43 |
41 |
54 |
111 |
25 |
GO:0009206 |
purine ribonucleoside triphosphate biosynthetic process |
913 |
16 |
64 |
53 |
21 |
35 |
24 |
79 |
39 |
36 |
82 |
79 |
127 |
43 |
41 |
54 |
111 |
25 |
GO:0006352 |
DNA-dependent transcription, initiation |
813 |
16 |
57 |
46 |
34 |
42 |
34 |
55 |
52 |
29 |
116 |
51 |
78 |
27 |
34 |
42 |
79 |
37 |
GO:0006754 |
ATP biosynthetic process |
768 |
16 |
55 |
47 |
18 |
29 |
18 |
71 |
27 |
28 |
74 |
69 |
92 |
35 |
37 |
45 |
102 |
21 |
GO:0015986 |
ATP synthesis coupled proton transport |
633 |
16 |
43 |
39 |
16 |
26 |
16 |
59 |
22 |
28 |
69 |
43 |
88 |
34 |
34 |
45 |
54 |
17 |
GO:0006221 |
pyrimidine nucleotide biosynthetic process |
601 |
16 |
164 |
18 |
21 |
21 |
20 |
30 |
23 |
28 |
58 |
30 |
72 |
20 |
19 |
19 |
36 |
22 |
GO:0006357 |
regulation of transcription from RNA polymerase II promoter |
560 |
16 |
35 |
29 |
18 |
22 |
22 |
31 |
28 |
25 |
89 |
53 |
43 |
20 |
23 |
51 |
42 |
29 |
GO:0006354 |
DNA-dependent transcription, elongation |
434 |
16 |
132 |
10 |
14 |
17 |
12 |
14 |
7 |
18 |
50 |
12 |
31 |
15 |
13 |
55 |
16 |
18 |
GO:0006342 |
chromatin silencing |
408 |
16 |
254 |
26 |
2 |
2 |
1 |
33 |
1 |
3 |
2 |
41 |
1 |
2 |
1 |
1 |
36 |
2 |
GO:0009220 |
pyrimidine ribonucleotide biosynthetic process |
370 |
16 |
149 |
11 |
10 |
9 |
10 |
17 |
13 |
11 |
20 |
21 |
41 |
10 |
7 |
12 |
19 |
10 |
GO:0006367 |
transcription initiation from RNA polymerase II promoter |
255 |
16 |
15 |
13 |
11 |
14 |
9 |
17 |
19 |
14 |
36 |
18 |
21 |
11 |
11 |
14 |
23 |
9 |
GO:0046132 |
pyrimidine ribonucleoside biosynthetic process |
243 |
16 |
23 |
11 |
10 |
9 |
10 |
17 |
13 |
11 |
20 |
21 |
41 |
10 |
7 |
12 |
18 |
10 |
GO:0046134 |
pyrimidine nucleoside biosynthetic process |
243 |
16 |
23 |
11 |
10 |
9 |
10 |
17 |
13 |
11 |
20 |
21 |
41 |
10 |
7 |
12 |
18 |
10 |
GO:0019363 |
pyridine nucleotide biosynthetic process |
239 |
16 |
13 |
14 |
11 |
10 |
19 |
16 |
15 |
10 |
23 |
20 |
26 |
6 |
15 |
6 |
21 |
14 |
GO:0019359 |
nicotinamide nucleotide biosynthetic process |
232 |
16 |
12 |
12 |
11 |
10 |
19 |
15 |
15 |
10 |
22 |
19 |
26 |
6 |
15 |
6 |
20 |
14 |
GO:1901070 |
guanosine-containing compound biosynthetic process |
179 |
16 |
13 |
9 |
5 |
7 |
7 |
9 |
13 |
9 |
17 |
12 |
37 |
9 |
6 |
10 |
10 |
6 |
GO:0006368 |
transcription elongation from RNA polymerase II promoter |
177 |
16 |
1 |
1 |
11 |
14 |
6 |
2 |
3 |
14 |
36 |
3 |
15 |
9 |
7 |
45 |
2 |
8 |
GO:0006188 |
IMP biosynthetic process |
173 |
16 |
16 |
8 |
7 |
8 |
9 |
11 |
6 |
12 |
22 |
17 |
14 |
6 |
6 |
6 |
16 |
9 |
GO:0009226 |
nucleotide-sugar biosynthetic process |
166 |
16 |
41 |
11 |
4 |
5 |
4 |
29 |
2 |
3 |
6 |
19 |
8 |
4 |
5 |
3 |
18 |
4 |
GO:0031048 |
chromatin silencing by small RNA |
165 |
5 |
119 |
11 |
0 |
0 |
0 |
11 |
0 |
0 |
0 |
14 |
0 |
0 |
0 |
0 |
10 |
0 |
GO:0032784 |
regulation of DNA-dependent transcription, elongation |
153 |
16 |
9 |
5 |
4 |
8 |
7 |
5 |
7 |
7 |
24 |
8 |
19 |
8 |
7 |
14 |
10 |
11 |
GO:0006346 |
methylation-dependent chromatin silencing |
152 |
5 |
124 |
6 |
0 |
0 |
0 |
6 |
0 |
0 |
0 |
8 |
0 |
0 |
0 |
0 |
8 |
0 |
GO:0009148 |
pyrimidine nucleoside triphosphate biosynthetic process |
152 |
16 |
14 |
6 |
3 |
6 |
6 |
8 |
12 |
8 |
8 |
10 |
37 |
8 |
4 |
9 |
9 |
4 |
GO:0006556 |
S-adenosylmethionine biosynthetic process |
151 |
16 |
4 |
2 |
5 |
5 |
3 |
5 |
11 |
5 |
10 |
5 |
34 |
8 |
11 |
32 |
8 |
3 |
GO:0006241 |
CTP biosynthetic process |
150 |
16 |
14 |
6 |
3 |
6 |
6 |
8 |
12 |
8 |
8 |
10 |
35 |
8 |
4 |
9 |
9 |
4 |
GO:0009209 |
pyrimidine ribonucleoside triphosphate biosynthetic process |
150 |
16 |
14 |
6 |
3 |
6 |
6 |
8 |
12 |
8 |
8 |
10 |
35 |
8 |
4 |
9 |
9 |
4 |
GO:0006165 |
nucleoside diphosphate phosphorylation |
145 |
16 |
9 |
6 |
3 |
6 |
6 |
8 |
12 |
8 |
8 |
10 |
35 |
8 |
4 |
9 |
9 |
4 |
GO:0006183 |
GTP biosynthetic process |
145 |
16 |
9 |
6 |
3 |
6 |
6 |
8 |
12 |
8 |
8 |
10 |
35 |
8 |
4 |
9 |
9 |
4 |
GO:0006228 |
UTP biosynthetic process |
145 |
16 |
9 |
6 |
3 |
6 |
6 |
8 |
12 |
8 |
8 |
10 |
35 |
8 |
4 |
9 |
9 |
4 |
GO:0009130 |
pyrimidine nucleoside monophosphate biosynthetic process |
141 |
16 |
19 |
6 |
9 |
5 |
5 |
13 |
2 |
4 |
25 |
13 |
8 |
3 |
4 |
4 |
14 |
7 |
GO:0009435 |
NAD biosynthetic process |
137 |
16 |
8 |
7 |
6 |
2 |
13 |
9 |
7 |
5 |
13 |
12 |
19 |
5 |
10 |
2 |
12 |
7 |
GO:0015937 |
coenzyme A biosynthetic process |
129 |
16 |
15 |
8 |
5 |
7 |
3 |
10 |
11 |
3 |
11 |
10 |
11 |
4 |
3 |
4 |
19 |
5 |
GO:0033866 |
nucleoside bisphosphate biosynthetic process |
129 |
16 |
15 |
8 |
5 |
7 |
3 |
10 |
11 |
3 |
11 |
10 |
11 |
4 |
3 |
4 |
19 |
5 |
GO:0034030 |
ribonucleoside bisphosphate biosynthetic process |
129 |
16 |
15 |
8 |
5 |
7 |
3 |
10 |
11 |
3 |
11 |
10 |
11 |
4 |
3 |
4 |
19 |
5 |
GO:0034033 |
purine nucleoside bisphosphate biosynthetic process |
129 |
16 |
15 |
8 |
5 |
7 |
3 |
10 |
11 |
3 |
11 |
10 |
11 |
4 |
3 |
4 |
19 |
5 |
GO:0043101 |
purine-containing compound salvage |
127 |
16 |
10 |
4 |
5 |
8 |
10 |
9 |
1 |
8 |
14 |
6 |
17 |
10 |
7 |
2 |
8 |
8 |
GO:0043173 |
nucleotide salvage |
118 |
15 |
17 |
5 |
7 |
5 |
6 |
7 |
0 |
6 |
15 |
7 |
13 |
4 |
7 |
4 |
6 |
9 |
GO:0042793 |
transcription from plastid promoter |
104 |
5 |
72 |
7 |
0 |
0 |
0 |
8 |
0 |
0 |
0 |
9 |
0 |
0 |
0 |
0 |
8 |
0 |
GO:0006189 |
'de novo' IMP biosynthetic process |
102 |
16 |
12 |
5 |
3 |
4 |
4 |
8 |
5 |
8 |
15 |
10 |
6 |
3 |
2 |
3 |
10 |
4 |
GO:0006741 |
NADP biosynthetic process |
95 |
16 |
4 |
5 |
5 |
8 |
6 |
6 |
8 |
5 |
9 |
7 |
7 |
1 |
5 |
4 |
8 |
7 |
GO:0006222 |
UMP biosynthetic process |
94 |
16 |
13 |
4 |
7 |
3 |
4 |
9 |
1 |
3 |
12 |
10 |
6 |
2 |
3 |
3 |
8 |
6 |
GO:0009174 |
pyrimidine ribonucleoside monophosphate biosynthetic process |
94 |
16 |
13 |
4 |
7 |
3 |
4 |
9 |
1 |
3 |
12 |
10 |
6 |
2 |
3 |
3 |
8 |
6 |
GO:0006383 |
transcription from RNA polymerase III promoter |
93 |
16 |
3 |
4 |
3 |
4 |
8 |
4 |
4 |
2 |
23 |
3 |
10 |
3 |
5 |
4 |
5 |
8 |
GO:0009263 |
deoxyribonucleotide biosynthetic process |
82 |
16 |
10 |
5 |
3 |
3 |
2 |
7 |
1 |
4 |
17 |
6 |
7 |
3 |
2 |
1 |
9 |
2 |
GO:0009265 |
2'-deoxyribonucleotide biosynthetic process |
81 |
16 |
9 |
5 |
3 |
3 |
2 |
7 |
1 |
4 |
17 |
6 |
7 |
3 |
2 |
1 |
9 |
2 |
GO:0009221 |
pyrimidine deoxyribonucleotide biosynthetic process |
71 |
16 |
7 |
3 |
3 |
3 |
2 |
5 |
1 |
4 |
17 |
4 |
7 |
3 |
2 |
1 |
7 |
2 |
GO:0008655 |
pyrimidine-containing compound salvage |
70 |
15 |
9 |
4 |
5 |
2 |
3 |
4 |
0 |
3 |
9 |
8 |
6 |
1 |
3 |
2 |
5 |
6 |
GO:0006353 |
DNA-dependent transcription, termination |
65 |
16 |
9 |
6 |
3 |
2 |
1 |
4 |
4 |
3 |
4 |
4 |
5 |
2 |
4 |
1 |
11 |
2 |
GO:0032786 |
positive regulation of DNA-dependent transcription, elongation |
57 |
16 |
2 |
2 |
2 |
6 |
2 |
1 |
3 |
5 |
11 |
2 |
7 |
4 |
1 |
4 |
3 |
2 |
GO:0051090 |
regulation of sequence-specific DNA binding transcription factor activity |
57 |
15 |
8 |
6 |
1 |
1 |
1 |
7 |
1 |
1 |
5 |
8 |
1 |
0 |
1 |
3 |
12 |
1 |
GO:0006166 |
purine ribonucleoside salvage |
55 |
15 |
5 |
2 |
2 |
4 |
5 |
3 |
1 |
2 |
7 |
5 |
7 |
3 |
2 |
0 |
4 |
3 |
GO:0043174 |
nucleoside salvage |
55 |
15 |
5 |
2 |
2 |
4 |
5 |
3 |
1 |
2 |
7 |
5 |
7 |
3 |
2 |
0 |
4 |
3 |
GO:0071897 |
DNA biosynthetic process |
55 |
14 |
4 |
3 |
1 |
1 |
5 |
2 |
0 |
2 |
18 |
2 |
3 |
0 |
4 |
4 |
2 |
4 |
GO:0009298 |
GDP-mannose biosynthetic process |
53 |
16 |
6 |
1 |
2 |
4 |
3 |
8 |
1 |
2 |
5 |
2 |
6 |
3 |
3 |
2 |
2 |
3 |
GO:0006359 |
regulation of transcription from RNA polymerase III promoter |
50 |
16 |
1 |
1 |
2 |
3 |
4 |
1 |
3 |
1 |
12 |
2 |
6 |
2 |
3 |
3 |
1 |
5 |
GO:0009157 |
deoxyribonucleoside monophosphate biosynthetic process |
47 |
16 |
6 |
2 |
2 |
2 |
1 |
4 |
1 |
1 |
13 |
3 |
2 |
1 |
1 |
1 |
6 |
1 |
GO:0009177 |
pyrimidine deoxyribonucleoside monophosphate biosynthetic process |
47 |
16 |
6 |
2 |
2 |
2 |
1 |
4 |
1 |
1 |
13 |
3 |
2 |
1 |
1 |
1 |
6 |
1 |
GO:0010138 |
pyrimidine ribonucleotide salvage |
47 |
15 |
6 |
1 |
4 |
2 |
2 |
2 |
0 |
2 |
8 |
4 |
4 |
1 |
2 |
2 |
2 |
5 |
GO:0032262 |
pyrimidine nucleotide salvage |
47 |
15 |
6 |
1 |
4 |
2 |
2 |
2 |
0 |
2 |
8 |
4 |
4 |
1 |
2 |
2 |
2 |
5 |
GO:0044206 |
UMP salvage |
47 |
15 |
6 |
1 |
4 |
2 |
2 |
2 |
0 |
2 |
8 |
4 |
4 |
1 |
2 |
2 |
2 |
5 |
GO:0009190 |
cyclic nucleotide biosynthetic process |
46 |
5 |
13 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
3 |
2 |
0 |
0 |
0 |
27 |
0 |
GO:0006231 |
dTMP biosynthetic process |
45 |
16 |
5 |
2 |
2 |
2 |
1 |
3 |
1 |
1 |
13 |
3 |
2 |
1 |
1 |
1 |
6 |
1 |
GO:0008616 |
queuosine biosynthetic process |
45 |
15 |
0 |
2 |
4 |
2 |
1 |
2 |
3 |
3 |
7 |
4 |
2 |
2 |
3 |
1 |
5 |
4 |
GO:0032261 |
purine nucleotide salvage |
44 |
12 |
7 |
0 |
3 |
3 |
4 |
1 |
0 |
3 |
5 |
0 |
7 |
2 |
3 |
2 |
0 |
4 |
GO:0034243 |
regulation of transcription elongation from RNA polymerase II promoter |
43 |
16 |
1 |
1 |
1 |
5 |
1 |
2 |
3 |
3 |
10 |
3 |
3 |
2 |
1 |
4 |
2 |
1 |
GO:0052652 |
cyclic purine nucleotide metabolic process |
40 |
3 |
13 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
26 |
0 |
GO:0006182 |
cGMP biosynthetic process |
39 |
2 |
13 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
26 |
0 |
GO:0006269 |
DNA replication, synthesis of RNA primer |
39 |
15 |
3 |
2 |
3 |
3 |
2 |
2 |
3 |
2 |
3 |
3 |
2 |
1 |
2 |
5 |
3 |
0 |
GO:0032264 |
IMP salvage |
39 |
12 |
2 |
0 |
3 |
3 |
4 |
1 |
0 |
3 |
5 |
0 |
7 |
2 |
3 |
2 |
0 |
4 |
GO:0006168 |
adenine salvage |
35 |
13 |
6 |
2 |
0 |
1 |
1 |
5 |
0 |
3 |
2 |
1 |
2 |
5 |
2 |
0 |
4 |
1 |
GO:0031935 |
regulation of chromatin silencing |
35 |
5 |
14 |
4 |
0 |
0 |
0 |
5 |
0 |
0 |
0 |
6 |
0 |
0 |
0 |
0 |
6 |
0 |
GO:0032968 |
positive regulation of transcription elongation from RNA polymerase II promoter |
35 |
13 |
0 |
0 |
1 |
5 |
1 |
0 |
3 |
3 |
9 |
1 |
3 |
2 |
1 |
4 |
1 |
1 |
GO:0043096 |
purine nucleobase salvage |
35 |
13 |
6 |
2 |
0 |
1 |
1 |
5 |
0 |
3 |
2 |
1 |
2 |
5 |
2 |
0 |
4 |
1 |
GO:0006177 |
GMP biosynthetic process |
34 |
16 |
4 |
3 |
2 |
1 |
1 |
1 |
1 |
1 |
9 |
2 |
2 |
1 |
2 |
1 |
1 |
2 |
GO:0044205 |
'de novo' UMP biosynthetic process |
32 |
16 |
6 |
1 |
1 |
1 |
1 |
6 |
1 |
1 |
4 |
2 |
2 |
1 |
1 |
1 |
2 |
1 |
GO:0019985 |
translesion synthesis |
31 |
12 |
3 |
3 |
0 |
0 |
4 |
2 |
0 |
1 |
5 |
2 |
2 |
0 |
2 |
2 |
2 |
3 |
GO:0016480 |
negative regulation of transcription from RNA polymerase III promoter |
30 |
16 |
1 |
1 |
1 |
2 |
2 |
1 |
2 |
1 |
8 |
2 |
4 |
1 |
1 |
1 |
1 |
1 |
GO:0042350 |
GDP-L-fucose biosynthetic process |
27 |
15 |
5 |
3 |
1 |
1 |
1 |
4 |
1 |
1 |
0 |
2 |
1 |
1 |
1 |
1 |
3 |
1 |
GO:0043620 |
regulation of DNA-dependent transcription in response to stress |
27 |
5 |
5 |
2 |
0 |
0 |
0 |
4 |
0 |
0 |
0 |
6 |
0 |
0 |
0 |
0 |
10 |
0 |
GO:0043433 |
negative regulation of sequence-specific DNA binding transcription factor activity |
24 |
5 |
5 |
4 |
0 |
0 |
0 |
5 |
0 |
0 |
0 |
3 |
0 |
0 |
0 |
0 |
7 |
0 |
GO:0006348 |
chromatin silencing at telomere |
23 |
16 |
1 |
1 |
2 |
2 |
1 |
1 |
1 |
3 |
2 |
1 |
1 |
2 |
1 |
1 |
1 |
2 |
GO:0009133 |
nucleoside diphosphate biosynthetic process |
23 |
14 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
3 |
5 |
1 |
3 |
2 |
1 |
0 |
1 |
1 |
GO:0042777 |
plasma membrane ATP synthesis coupled proton transport |
23 |
4 |
4 |
4 |
0 |
0 |
0 |
11 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
0 |
GO:0006233 |
dTDP biosynthetic process |
22 |
14 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
3 |
4 |
1 |
3 |
2 |
1 |
0 |
1 |
1 |
GO:0009139 |
pyrimidine nucleoside diphosphate biosynthetic process |
22 |
14 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
3 |
4 |
1 |
3 |
2 |
1 |
0 |
1 |
1 |
GO:0009189 |
deoxyribonucleoside diphosphate biosynthetic process |
22 |
14 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
3 |
4 |
1 |
3 |
2 |
1 |
0 |
1 |
1 |
GO:0009197 |
pyrimidine deoxyribonucleoside diphosphate biosynthetic process |
22 |
14 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
3 |
4 |
1 |
3 |
2 |
1 |
0 |
1 |
1 |
GO:0019365 |
pyridine nucleotide salvage |
22 |
10 |
3 |
3 |
0 |
0 |
0 |
3 |
0 |
1 |
2 |
2 |
2 |
1 |
2 |
0 |
3 |
0 |
GO:0042351 |
'de novo' GDP-L-fucose biosynthetic process |
22 |
15 |
4 |
2 |
1 |
1 |
1 |
3 |
1 |
1 |
0 |
1 |
1 |
1 |
1 |
1 |
2 |
1 |
GO:0070919 |
production of siRNA involved in chromatin silencing by small RNA |
22 |
5 |
3 |
6 |
0 |
0 |
0 |
4 |
0 |
0 |
0 |
5 |
0 |
0 |
0 |
0 |
4 |
0 |
GO:0042776 |
mitochondrial ATP synthesis coupled proton transport |
21 |
5 |
5 |
2 |
0 |
0 |
0 |
6 |
0 |
0 |
0 |
3 |
0 |
0 |
0 |
0 |
5 |
0 |
GO:0043100 |
pyrimidine nucleobase salvage |
19 |
12 |
2 |
2 |
1 |
0 |
1 |
2 |
0 |
1 |
1 |
3 |
2 |
0 |
1 |
0 |
2 |
1 |
GO:0006065 |
UDP-glucuronate biosynthetic process |
18 |
5 |
4 |
1 |
0 |
0 |
0 |
5 |
0 |
0 |
0 |
4 |
0 |
0 |
0 |
0 |
4 |
0 |
GO:0010253 |
UDP-rhamnose biosynthetic process |
18 |
5 |
4 |
2 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
6 |
0 |
0 |
0 |
0 |
4 |
0 |
GO:0009202 |
deoxyribonucleoside triphosphate biosynthetic process |
17 |
6 |
3 |
3 |
0 |
0 |
0 |
3 |
0 |
0 |
0 |
3 |
2 |
0 |
0 |
0 |
3 |
0 |
GO:0043618 |
regulation of transcription from RNA polymerase II promoter in response to stress |
17 |
5 |
3 |
2 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
5 |
0 |
0 |
0 |
0 |
5 |
0 |
GO:0006384 |
transcription initiation from RNA polymerase III promoter |
16 |
6 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
8 |
0 |
2 |
1 |
1 |
0 |
0 |
2 |
GO:0019357 |
nicotinate nucleotide biosynthetic process |
16 |
10 |
2 |
1 |
0 |
0 |
0 |
2 |
0 |
1 |
2 |
1 |
2 |
1 |
2 |
0 |
2 |
0 |
GO:0019358 |
nicotinate nucleotide salvage |
16 |
10 |
2 |
1 |
0 |
0 |
0 |
2 |
0 |
1 |
2 |
1 |
2 |
1 |
2 |
0 |
2 |
0 |
GO:0009303 |
rRNA transcription |
15 |
7 |
3 |
2 |
0 |
0 |
0 |
2 |
0 |
0 |
1 |
4 |
0 |
1 |
0 |
0 |
2 |
0 |
GO:0006190 |
inosine salvage |
13 |
9 |
0 |
0 |
1 |
2 |
2 |
0 |
0 |
1 |
2 |
0 |
2 |
1 |
1 |
0 |
0 |
1 |
GO:0006223 |
uracil salvage |
13 |
12 |
1 |
1 |
1 |
0 |
1 |
1 |
0 |
1 |
1 |
1 |
2 |
0 |
1 |
0 |
1 |
1 |
GO:0046103 |
inosine biosynthetic process |
13 |
9 |
0 |
0 |
1 |
2 |
2 |
0 |
0 |
1 |
2 |
0 |
2 |
1 |
1 |
0 |
0 |
1 |
GO:0006344 |
maintenance of chromatin silencing |
12 |
5 |
2 |
2 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
5 |
0 |
GO:0009299 |
mRNA transcription |
12 |
5 |
4 |
2 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
3 |
0 |
GO:0019277 |
UDP-N-acetylgalactosamine biosynthetic process |
12 |
9 |
1 |
1 |
1 |
0 |
0 |
1 |
0 |
0 |
1 |
4 |
1 |
0 |
1 |
0 |
1 |
0 |
GO:0031937 |
positive regulation of chromatin silencing |
12 |
5 |
6 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
2 |
0 |
GO:0090308 |
regulation of methylation-dependent chromatin silencing |
12 |
5 |
6 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
2 |
0 |
GO:0090309 |
positive regulation of methylation-dependent chromatin silencing |
12 |
5 |
6 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
2 |
0 |
GO:0006167 |
AMP biosynthetic process |
11 |
5 |
6 |
1 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
0 |
GO:0042276 |
error-prone translesion synthesis |
11 |
5 |
2 |
3 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
2 |
0 |
GO:2001295 |
malonyl-CoA biosynthetic process |
11 |
4 |
5 |
1 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
0 |
GO:0000122 |
negative regulation of transcription from RNA polymerase II promoter |
10 |
8 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
1 |
2 |
0 |
2 |
0 |
1 |
0 |
1 |
1 |
GO:0006175 |
dATP biosynthetic process |
10 |
5 |
2 |
2 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
2 |
0 |
GO:0006176 |
dATP biosynthetic process from ADP |
10 |
5 |
2 |
2 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
2 |
0 |
GO:0009153 |
purine deoxyribonucleotide biosynthetic process |
10 |
5 |
2 |
2 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
2 |
0 |
GO:0009216 |
purine deoxyribonucleoside triphosphate biosynthetic process |
10 |
5 |
2 |
2 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
2 |
0 |
GO:0045944 |
positive regulation of transcription from RNA polymerase II promoter |
10 |
6 |
3 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
1 |
2 |
0 |
0 |
0 |
0 |
2 |
0 |
GO:0006048 |
UDP-N-acetylglucosamine biosynthetic process |
9 |
2 |
6 |
0 |
0 |
0 |
0 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
GO:0006169 |
adenosine salvage |
9 |
5 |
2 |
1 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
2 |
0 |
GO:0006990 |
positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response |
9 |
5 |
3 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
2 |
0 |
GO:0031554 |
regulation of DNA-dependent transcription, termination |
9 |
7 |
2 |
1 |
0 |
0 |
0 |
0 |
2 |
0 |
1 |
0 |
1 |
0 |
1 |
0 |
1 |
0 |
GO:0043619 |
regulation of transcription from RNA polymerase II promoter in response to oxidative stress |
9 |
5 |
1 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
4 |
0 |
0 |
0 |
0 |
2 |
0 |
GO:0045013 |
carbon catabolite repression of transcription |
9 |
5 |
1 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
4 |
0 |
0 |
0 |
0 |
2 |
0 |
GO:0045014 |
negative regulation of transcription by glucose |
9 |
5 |
1 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
4 |
0 |
0 |
0 |
0 |
2 |
0 |
GO:0045990 |
carbon catabolite regulation of transcription |
9 |
5 |
1 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
4 |
0 |
0 |
0 |
0 |
2 |
0 |
GO:0046015 |
regulation of transcription by glucose |
9 |
5 |
1 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
4 |
0 |
0 |
0 |
0 |
2 |
0 |
GO:0046086 |
adenosine biosynthetic process |
9 |
5 |
2 |
1 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
2 |
0 |
GO:1901522 |
positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus |
9 |
5 |
3 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
2 |
0 |
GO:0019305 |
dTDP-rhamnose biosynthetic process |
8 |
5 |
2 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
2 |
0 |
GO:0033358 |
UDP-L-arabinose biosynthetic process |
8 |
2 |
5 |
0 |
0 |
0 |
0 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
GO:0061392 |
regulation of transcription from RNA polymerase II promoter in response to osmotic stress |
8 |
5 |
2 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
3 |
0 |
GO:0061416 |
regulation of transcription from RNA polymerase II promoter in response to salt stress |
8 |
5 |
2 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
3 |
0 |
GO:0031555 |
transcriptional attenuation |
7 |
5 |
2 |
1 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
GO:0031564 |
transcription antitermination |
7 |
5 |
2 |
1 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
GO:0042794 |
rRNA transcription from plastid promoter |
7 |
5 |
1 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
3 |
0 |
0 |
0 |
0 |
1 |
0 |
GO:0030808 |
regulation of nucleotide biosynthetic process |
6 |
5 |
1 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
1 |
0 |
GO:0033320 |
UDP-D-xylose biosynthetic process |
6 |
1 |
6 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
GO:0033468 |
CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process |
6 |
5 |
1 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
2 |
0 |
GO:0080020 |
regulation of coenzyme A biosynthetic process |
6 |
5 |
1 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
1 |
0 |
GO:1900371 |
regulation of purine nucleotide biosynthetic process |
6 |
5 |
1 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
1 |
0 |
GO:0009301 |
snRNA transcription |
5 |
5 |
1 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
0 |
GO:0009304 |
tRNA transcription |
5 |
5 |
1 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
0 |
GO:0010964 |
regulation of chromatin silencing by small RNA |
5 |
5 |
1 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
0 |
GO:0042352 |
GDP-L-fucose salvage |
5 |
5 |
1 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
0 |
GO:0044209 |
AMP salvage |
5 |
1 |
5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
GO:0044211 |
CTP salvage |
5 |
1 |
5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
GO:0006557 |
S-adenosylmethioninamine biosynthetic process |
4 |
2 |
2 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
GO:0036172 |
thiamine salvage |
4 |
4 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
0 |
GO:0044208 |
'de novo' AMP biosynthetic process |
4 |
3 |
1 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
GO:0046109 |
uridine biosynthetic process |
4 |
4 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
0 |
GO:0006360 |
transcription from RNA polymerase I promoter |
3 |
1 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
GO:0006226 |
dUMP biosynthetic process |
2 |
2 |
1 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
GO:0006229 |
dUTP biosynthetic process |
2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
GO:0009212 |
pyrimidine deoxyribonucleoside triphosphate biosynthetic process |
2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
GO:0015960 |
diadenosine polyphosphate biosynthetic process |
2 |
1 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
GO:0015966 |
diadenosine tetraphosphate biosynthetic process |
2 |
1 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
GO:0031936 |
negative regulation of chromatin silencing |
2 |
1 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
GO:0070940 |
dephosphorylation of RNA polymerase II C-terminal domain |
2 |
2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
GO:0000183 |
chromatin silencing at rDNA |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
GO:0000731 |
DNA synthesis involved in DNA repair |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
GO:0006171 |
cAMP biosynthetic process |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
GO:0006172 |
ADP biosynthetic process |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
GO:0006178 |
guanine salvage |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
GO:0006238 |
CMP salvage |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
GO:0006369 |
termination of RNA polymerase II transcription |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
GO:0009136 |
purine nucleoside diphosphate biosynthetic process |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
GO:0009180 |
purine ribonucleoside diphosphate biosynthetic process |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
GO:0009188 |
ribonucleoside diphosphate biosynthetic process |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
GO:0009224 |
CMP biosynthetic process |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
GO:0030466 |
chromatin silencing at silent mating-type cassette |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
GO:0032263 |
GMP salvage |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
GO:0032785 |
negative regulation of DNA-dependent transcription, elongation |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
GO:0034244 |
negative regulation of transcription elongation from RNA polymerase II promoter |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
GO:0097056 |
selenocysteinyl-tRNA(Sec) biosynthetic process |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |