Gene family expansion analysis

Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.

Gene family
ORTHO03D408144
Gene count gene family
1
Total coding gene count
755,505
Keywords

Organisms

Organism Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Picea glauca28,90903.83%0%0
Picea abies66,63218.82%100%11.34
Picea sitchensis20,43402.7%0%0
Pinus pinaster76,426010.12%0%0
Pinus sylvestris36,10604.78%0%0
Pinus taeda84,446011.18%0%0
Pseudotsuga menziesii149,717019.82%0%0
Gnetum montanum32,54904.31%0%0
Taxus baccata32,06204.24%0%0
Cycas micholitzii28,90103.83%0%0
Ginkgo biloba30,40404.02%0%0
Populus trichocarpa41,43405.48%0%0
Arabidopsis thaliana27,41603.63%0%0
Oryza sativa ssp. japonica40,73805.39%0%0
Amborella trichopoda26,93103.56%0%0
Physcomitrella patens32,40004.29%0%0

Phylogenetic clades

Clade Num species Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Picea3115,975115.35%100%6.51
Pinus3196,978026.07%0%0
Pinaceae7462,670161.24%100%1.63
Gymnosperms11586,586177.64%100%1.29
Angiosperms4136,519018.07%0%0
Embryophyta16755,5051100%100%1