Gene family expansion analysis

Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.

Gene family
ORTHO03D049392
Gene count gene family
2
Total coding gene count
755,505
Keywords

Organisms

Organism Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Picea glauca28,90903.83%0%0
Picea abies66,63208.82%0%0
Picea sitchensis20,43402.7%0%0
Pinus pinaster76,426010.12%0%0
Pinus sylvestris36,10604.78%0%0
Pinus taeda84,446011.18%0%0
Pseudotsuga menziesii149,717019.82%0%0
Gnetum montanum32,54904.31%0%0
Taxus baccata32,06204.24%0%0
Cycas micholitzii28,90103.83%0%0
Ginkgo biloba30,40404.02%0%0
Populus trichocarpa41,43405.48%0%0
Arabidopsis thaliana27,41613.63%50%13.77
Oryza sativa ssp. japonica40,73815.39%50%9.28
Amborella trichopoda26,93103.56%0%0
Physcomitrella patens32,40004.29%0%0

Phylogenetic clades

Clade Num species Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Picea3115,975015.35%0%0
Pinus3196,978026.07%0%0
Pinaceae7462,670061.24%0%0
Gymnosperms11586,586077.64%0%0
Angiosperms4136,519218.07%100%5.53
Embryophyta16755,5052100%100%1