Gene family expansion analysis

Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.

Gene family
ORTHO03D018552
Gene count gene family
4
Total coding gene count
755,505
Keywords

Organisms

Organism Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Picea glauca28,90903.83%0%0
Picea abies66,63208.82%0%0
Picea sitchensis20,43402.7%0%0
Pinus pinaster76,426110.12%25%2.47
Pinus sylvestris36,10604.78%0%0
Pinus taeda84,446011.18%0%0
Pseudotsuga menziesii149,717019.82%0%0
Gnetum montanum32,54914.31%25%5.8
Taxus baccata32,06214.24%25%5.9
Cycas micholitzii28,90103.83%0%0
Ginkgo biloba30,40404.02%0%0
Populus trichocarpa41,43415.48%25%4.56
Arabidopsis thaliana27,41603.63%0%0
Oryza sativa ssp. japonica40,73805.39%0%0
Amborella trichopoda26,93103.56%0%0
Physcomitrella patens32,40004.29%0%0

Phylogenetic clades

Clade Num species Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Picea3115,975015.35%0%0
Pinus3196,978126.07%25%0.96
Pinaceae7462,670161.24%25%0.41
Gymnosperms11586,586377.64%75%0.97
Angiosperms4136,519118.07%25%1.38
Embryophyta16755,5054100%100%1