Gene family expansion analysis

Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.

Gene family
HOM03D007188
Gene count gene family
18
Total coding gene count
755,505
Keywords

Organisms

Organism Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Picea glauca28,90903.83%0%0
Picea abies66,63248.82%22.22%2.52
Picea sitchensis20,43402.7%0%0
Pinus pinaster76,426210.12%11.11%1.1
Pinus sylvestris36,10604.78%0%0
Pinus taeda84,446011.18%0%0
Pseudotsuga menziesii149,717419.82%22.22%1.12
Gnetum montanum32,54944.31%22.22%5.16
Taxus baccata32,06204.24%0%0
Cycas micholitzii28,90103.83%0%0
Ginkgo biloba30,40404.02%0%0
Populus trichocarpa41,43415.48%5.56%1.01
Arabidopsis thaliana27,41613.63%5.56%1.53
Oryza sativa ssp. japonica40,73805.39%0%0
Amborella trichopoda26,93113.56%5.56%1.56
Physcomitrella patens32,40014.29%5.56%1.3

Phylogenetic clades

Clade Num species Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Picea3115,975415.35%22.22%1.45
Pinus3196,978226.07%11.11%0.43
Pinaceae7462,6701061.24%55.56%0.91
Gymnosperms11586,5861477.64%77.78%1
Angiosperms4136,519318.07%16.67%0.92
Embryophyta16755,50518100%100%1