Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03D004622
- Gene count gene family
- 28
- Total coding gene count
- 755,505
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Picea glauca | 28,909 | 2 | 3.83% | 7.14% | 1.86 |
Picea abies | 66,632 | 4 | 8.82% | 14.29% | 1.62 |
Picea sitchensis | 20,434 | 1 | 2.7% | 3.57% | 1.32 |
Pinus pinaster | 76,426 | 3 | 10.12% | 10.71% | 1.06 |
Pinus sylvestris | 36,106 | 2 | 4.78% | 7.14% | 1.49 |
Pinus taeda | 84,446 | 6 | 11.18% | 21.43% | 1.92 |
Pseudotsuga menziesii | 149,717 | 4 | 19.82% | 14.29% | 0.72 |
Gnetum montanum | 32,549 | 0 | 4.31% | 0% | 0 |
Taxus baccata | 32,062 | 0 | 4.24% | 0% | 0 |
Cycas micholitzii | 28,901 | 0 | 3.83% | 0% | 0 |
Ginkgo biloba | 30,404 | 2 | 4.02% | 7.14% | 1.78 |
Populus trichocarpa | 41,434 | 0 | 5.48% | 0% | 0 |
Arabidopsis thaliana | 27,416 | 0 | 3.63% | 0% | 0 |
Oryza sativa ssp. japonica | 40,738 | 0 | 5.39% | 0% | 0 |
Amborella trichopoda | 26,931 | 0 | 3.56% | 0% | 0 |
Physcomitrella patens | 32,400 | 4 | 4.29% | 14.29% | 3.33 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Picea | 3 | 115,975 | 7 | 15.35% | 25% | 1.63 |
Pinus | 3 | 196,978 | 11 | 26.07% | 39.29% | 1.51 |
Pinaceae | 7 | 462,670 | 22 | 61.24% | 78.57% | 1.28 |
Gymnosperms | 11 | 586,586 | 24 | 77.64% | 85.71% | 1.1 |
Angiosperms | 4 | 136,519 | 0 | 18.07% | 0% | 0 |
Embryophyta | 16 | 755,505 | 28 | 100% | 100% | 1 |