Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03D001175
- Gene count gene family
- 83
- Total coding gene count
- 755,505
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Picea glauca | 28,909 | 8 | 3.83% | 9.64% | 2.52 |
Picea abies | 66,632 | 2 | 8.82% | 2.41% | 0.27 |
Picea sitchensis | 20,434 | 9 | 2.7% | 10.84% | 4.01 |
Pinus pinaster | 76,426 | 23 | 10.12% | 27.71% | 2.74 |
Pinus sylvestris | 36,106 | 1 | 4.78% | 1.2% | 0.25 |
Pinus taeda | 84,446 | 8 | 11.18% | 9.64% | 0.86 |
Pseudotsuga menziesii | 149,717 | 7 | 19.82% | 8.43% | 0.43 |
Gnetum montanum | 32,549 | 1 | 4.31% | 1.2% | 0.28 |
Taxus baccata | 32,062 | 2 | 4.24% | 2.41% | 0.57 |
Cycas micholitzii | 28,901 | 2 | 3.83% | 2.41% | 0.63 |
Ginkgo biloba | 30,404 | 2 | 4.02% | 2.41% | 0.6 |
Populus trichocarpa | 41,434 | 4 | 5.48% | 4.82% | 0.88 |
Arabidopsis thaliana | 27,416 | 3 | 3.63% | 3.61% | 0.99 |
Oryza sativa ssp. japonica | 40,738 | 3 | 5.39% | 3.61% | 0.67 |
Amborella trichopoda | 26,931 | 3 | 3.56% | 3.61% | 1.01 |
Physcomitrella patens | 32,400 | 5 | 4.29% | 6.02% | 1.4 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Picea | 3 | 115,975 | 19 | 15.35% | 22.89% | 1.49 |
Pinus | 3 | 196,978 | 32 | 26.07% | 38.55% | 1.48 |
Pinaceae | 7 | 462,670 | 58 | 61.24% | 69.88% | 1.14 |
Gymnosperms | 11 | 586,586 | 65 | 77.64% | 78.31% | 1.01 |
Angiosperms | 4 | 136,519 | 13 | 18.07% | 15.66% | 0.87 |
Embryophyta | 16 | 755,505 | 83 | 100% | 100% | 1 |