Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03D001084
- Gene count gene family
- 87
- Total coding gene count
- 755,505
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Picea glauca | 28,909 | 6 | 3.83% | 6.9% | 1.8 |
Picea abies | 66,632 | 12 | 8.82% | 13.79% | 1.56 |
Picea sitchensis | 20,434 | 4 | 2.7% | 4.6% | 1.7 |
Pinus pinaster | 76,426 | 12 | 10.12% | 13.79% | 1.36 |
Pinus sylvestris | 36,106 | 8 | 4.78% | 9.2% | 1.92 |
Pinus taeda | 84,446 | 29 | 11.18% | 33.33% | 2.98 |
Pseudotsuga menziesii | 149,717 | 7 | 19.82% | 8.05% | 0.41 |
Gnetum montanum | 32,549 | 1 | 4.31% | 1.15% | 0.27 |
Taxus baccata | 32,062 | 3 | 4.24% | 3.45% | 0.81 |
Cycas micholitzii | 28,901 | 1 | 3.83% | 1.15% | 0.3 |
Ginkgo biloba | 30,404 | 2 | 4.02% | 2.3% | 0.57 |
Populus trichocarpa | 41,434 | 0 | 5.48% | 0% | 0 |
Arabidopsis thaliana | 27,416 | 0 | 3.63% | 0% | 0 |
Oryza sativa ssp. japonica | 40,738 | 0 | 5.39% | 0% | 0 |
Amborella trichopoda | 26,931 | 0 | 3.56% | 0% | 0 |
Physcomitrella patens | 32,400 | 2 | 4.29% | 2.3% | 0.54 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Picea | 3 | 115,975 | 22 | 15.35% | 25.29% | 1.65 |
Pinus | 3 | 196,978 | 49 | 26.07% | 56.32% | 2.16 |
Pinaceae | 7 | 462,670 | 78 | 61.24% | 89.66% | 1.46 |
Gymnosperms | 11 | 586,586 | 85 | 77.64% | 97.7% | 1.26 |
Angiosperms | 4 | 136,519 | 0 | 18.07% | 0% | 0 |
Embryophyta | 16 | 755,505 | 87 | 100% | 100% | 1 |