Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03D000780
- Gene count gene family
- 110
- Total coding gene count
- 755,505
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Picea glauca | 28,909 | 5 | 3.83% | 4.55% | 1.19 |
Picea abies | 66,632 | 5 | 8.82% | 4.55% | 0.52 |
Picea sitchensis | 20,434 | 4 | 2.7% | 3.64% | 1.35 |
Pinus pinaster | 76,426 | 9 | 10.12% | 8.18% | 0.81 |
Pinus sylvestris | 36,106 | 5 | 4.78% | 4.55% | 0.95 |
Pinus taeda | 84,446 | 21 | 11.18% | 19.09% | 1.71 |
Pseudotsuga menziesii | 149,717 | 11 | 19.82% | 10% | 0.5 |
Gnetum montanum | 32,549 | 6 | 4.31% | 5.45% | 1.26 |
Taxus baccata | 32,062 | 5 | 4.24% | 4.55% | 1.07 |
Cycas micholitzii | 28,901 | 6 | 3.83% | 5.45% | 1.42 |
Ginkgo biloba | 30,404 | 8 | 4.02% | 7.27% | 1.81 |
Populus trichocarpa | 41,434 | 7 | 5.48% | 6.36% | 1.16 |
Arabidopsis thaliana | 27,416 | 6 | 3.63% | 5.45% | 1.5 |
Oryza sativa ssp. japonica | 40,738 | 5 | 5.39% | 4.55% | 0.84 |
Amborella trichopoda | 26,931 | 3 | 3.56% | 2.73% | 0.77 |
Physcomitrella patens | 32,400 | 4 | 4.29% | 3.64% | 0.85 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Picea | 3 | 115,975 | 14 | 15.35% | 12.73% | 0.83 |
Pinus | 3 | 196,978 | 35 | 26.07% | 31.82% | 1.22 |
Pinaceae | 7 | 462,670 | 60 | 61.24% | 54.55% | 0.89 |
Gymnosperms | 11 | 586,586 | 85 | 77.64% | 77.27% | 1 |
Angiosperms | 4 | 136,519 | 21 | 18.07% | 19.09% | 1.06 |
Embryophyta | 16 | 755,505 | 110 | 100% | 100% | 1 |