Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03D000344
- Gene count gene family
- 202
- Total coding gene count
- 755,505
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Picea glauca | 28,909 | 14 | 3.83% | 6.93% | 1.81 |
Picea abies | 66,632 | 17 | 8.82% | 8.42% | 0.95 |
Picea sitchensis | 20,434 | 9 | 2.7% | 4.46% | 1.65 |
Pinus pinaster | 76,426 | 33 | 10.12% | 16.34% | 1.61 |
Pinus sylvestris | 36,106 | 8 | 4.78% | 3.96% | 0.83 |
Pinus taeda | 84,446 | 32 | 11.18% | 15.84% | 1.42 |
Pseudotsuga menziesii | 149,717 | 39 | 19.82% | 19.31% | 0.97 |
Gnetum montanum | 32,549 | 9 | 4.31% | 4.46% | 1.03 |
Taxus baccata | 32,062 | 3 | 4.24% | 1.49% | 0.35 |
Cycas micholitzii | 28,901 | 9 | 3.83% | 4.46% | 1.16 |
Ginkgo biloba | 30,404 | 5 | 4.02% | 2.48% | 0.62 |
Populus trichocarpa | 41,434 | 7 | 5.48% | 3.47% | 0.63 |
Arabidopsis thaliana | 27,416 | 5 | 3.63% | 2.48% | 0.68 |
Oryza sativa ssp. japonica | 40,738 | 5 | 5.39% | 2.48% | 0.46 |
Amborella trichopoda | 26,931 | 2 | 3.56% | 0.99% | 0.28 |
Physcomitrella patens | 32,400 | 5 | 4.29% | 2.48% | 0.58 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Picea | 3 | 115,975 | 40 | 15.35% | 19.8% | 1.29 |
Pinus | 3 | 196,978 | 73 | 26.07% | 36.14% | 1.39 |
Pinaceae | 7 | 462,670 | 152 | 61.24% | 75.25% | 1.23 |
Gymnosperms | 11 | 586,586 | 178 | 77.64% | 88.12% | 1.13 |
Angiosperms | 4 | 136,519 | 19 | 18.07% | 9.41% | 0.52 |
Embryophyta | 16 | 755,505 | 202 | 100% | 100% | 1 |