Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03D000221
- Gene count gene family
- 274
- Total coding gene count
- 755,505
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Picea glauca | 28,909 | 23 | 3.83% | 8.39% | 2.19 |
Picea abies | 66,632 | 26 | 8.82% | 9.49% | 1.08 |
Picea sitchensis | 20,434 | 14 | 2.7% | 5.11% | 1.89 |
Pinus pinaster | 76,426 | 15 | 10.12% | 5.47% | 0.54 |
Pinus sylvestris | 36,106 | 10 | 4.78% | 3.65% | 0.76 |
Pinus taeda | 84,446 | 37 | 11.18% | 13.5% | 1.21 |
Pseudotsuga menziesii | 149,717 | 29 | 19.82% | 10.58% | 0.53 |
Gnetum montanum | 32,549 | 12 | 4.31% | 4.38% | 1.02 |
Taxus baccata | 32,062 | 10 | 4.24% | 3.65% | 0.86 |
Cycas micholitzii | 28,901 | 10 | 3.83% | 3.65% | 0.95 |
Ginkgo biloba | 30,404 | 12 | 4.02% | 4.38% | 1.09 |
Populus trichocarpa | 41,434 | 18 | 5.48% | 6.57% | 1.2 |
Arabidopsis thaliana | 27,416 | 16 | 3.63% | 5.84% | 1.61 |
Oryza sativa ssp. japonica | 40,738 | 17 | 5.39% | 6.2% | 1.15 |
Amborella trichopoda | 26,931 | 12 | 3.56% | 4.38% | 1.23 |
Physcomitrella patens | 32,400 | 13 | 4.29% | 4.74% | 1.1 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Picea | 3 | 115,975 | 63 | 15.35% | 22.99% | 1.5 |
Pinus | 3 | 196,978 | 62 | 26.07% | 22.63% | 0.87 |
Pinaceae | 7 | 462,670 | 154 | 61.24% | 56.2% | 0.92 |
Gymnosperms | 11 | 586,586 | 198 | 77.64% | 72.26% | 0.93 |
Angiosperms | 4 | 136,519 | 63 | 18.07% | 22.99% | 1.27 |
Embryophyta | 16 | 755,505 | 274 | 100% | 100% | 1 |