Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03D000087
- Gene count gene family
- 601
- Total coding gene count
- 755,505
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Picea glauca | 28,909 | 19 | 3.83% | 3.16% | 0.83 |
Picea abies | 66,632 | 42 | 8.82% | 6.99% | 0.79 |
Picea sitchensis | 20,434 | 12 | 2.7% | 2% | 0.74 |
Pinus pinaster | 76,426 | 61 | 10.12% | 10.15% | 1 |
Pinus sylvestris | 36,106 | 29 | 4.78% | 4.83% | 1.01 |
Pinus taeda | 84,446 | 78 | 11.18% | 12.98% | 1.16 |
Pseudotsuga menziesii | 149,717 | 80 | 19.82% | 13.31% | 0.67 |
Gnetum montanum | 32,549 | 46 | 4.31% | 7.65% | 1.77 |
Taxus baccata | 32,062 | 51 | 4.24% | 8.49% | 2 |
Cycas micholitzii | 28,901 | 34 | 3.83% | 5.66% | 1.48 |
Ginkgo biloba | 30,404 | 32 | 4.02% | 5.32% | 1.32 |
Populus trichocarpa | 41,434 | 28 | 5.48% | 4.66% | 0.85 |
Arabidopsis thaliana | 27,416 | 18 | 3.63% | 3% | 0.83 |
Oryza sativa ssp. japonica | 40,738 | 17 | 5.39% | 2.83% | 0.53 |
Amborella trichopoda | 26,931 | 20 | 3.56% | 3.33% | 0.94 |
Physcomitrella patens | 32,400 | 34 | 4.29% | 5.66% | 1.32 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Picea | 3 | 115,975 | 73 | 15.35% | 12.15% | 0.79 |
Pinus | 3 | 196,978 | 168 | 26.07% | 27.95% | 1.07 |
Pinaceae | 7 | 462,670 | 321 | 61.24% | 53.41% | 0.87 |
Gymnosperms | 11 | 586,586 | 484 | 77.64% | 80.53% | 1.04 |
Angiosperms | 4 | 136,519 | 83 | 18.07% | 13.81% | 0.76 |
Embryophyta | 16 | 755,505 | 601 | 100% | 100% | 1 |