Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03D000063
- Gene count gene family
- 768
- Total coding gene count
- 755,505
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Picea glauca | 28,909 | 31 | 3.83% | 4.04% | 1.05 |
Picea abies | 66,632 | 77 | 8.82% | 10.03% | 1.14 |
Picea sitchensis | 20,434 | 19 | 2.7% | 2.47% | 0.91 |
Pinus pinaster | 76,426 | 57 | 10.12% | 7.42% | 0.73 |
Pinus sylvestris | 36,106 | 30 | 4.78% | 3.91% | 0.82 |
Pinus taeda | 84,446 | 153 | 11.18% | 19.92% | 1.78 |
Pseudotsuga menziesii | 149,717 | 70 | 19.82% | 9.11% | 0.46 |
Gnetum montanum | 32,549 | 23 | 4.31% | 2.99% | 0.69 |
Taxus baccata | 32,062 | 28 | 4.24% | 3.65% | 0.86 |
Cycas micholitzii | 28,901 | 37 | 3.83% | 4.82% | 1.26 |
Ginkgo biloba | 30,404 | 37 | 4.02% | 4.82% | 1.2 |
Populus trichocarpa | 41,434 | 57 | 5.48% | 7.42% | 1.35 |
Arabidopsis thaliana | 27,416 | 46 | 3.63% | 5.99% | 1.65 |
Oryza sativa ssp. japonica | 40,738 | 45 | 5.39% | 5.86% | 1.09 |
Amborella trichopoda | 26,931 | 21 | 3.56% | 2.73% | 0.77 |
Physcomitrella patens | 32,400 | 37 | 4.29% | 4.82% | 1.12 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Picea | 3 | 115,975 | 127 | 15.35% | 16.54% | 1.08 |
Pinus | 3 | 196,978 | 240 | 26.07% | 31.25% | 1.2 |
Pinaceae | 7 | 462,670 | 437 | 61.24% | 56.9% | 0.93 |
Gymnosperms | 11 | 586,586 | 562 | 77.64% | 73.18% | 0.94 |
Angiosperms | 4 | 136,519 | 169 | 18.07% | 22.01% | 1.22 |
Embryophyta | 16 | 755,505 | 768 | 100% | 100% | 1 |