Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03D000056
- Gene count gene family
- 829
- Total coding gene count
- 755,505
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Picea glauca | 28,909 | 52 | 3.83% | 6.27% | 1.64 |
Picea abies | 66,632 | 113 | 8.82% | 13.63% | 1.55 |
Picea sitchensis | 20,434 | 20 | 2.7% | 2.41% | 0.89 |
Pinus pinaster | 76,426 | 94 | 10.12% | 11.34% | 1.12 |
Pinus sylvestris | 36,106 | 13 | 4.78% | 1.57% | 0.33 |
Pinus taeda | 84,446 | 254 | 11.18% | 30.64% | 2.74 |
Pseudotsuga menziesii | 149,717 | 90 | 19.82% | 10.86% | 0.55 |
Gnetum montanum | 32,549 | 1 | 4.31% | 0.12% | 0.03 |
Taxus baccata | 32,062 | 33 | 4.24% | 3.98% | 0.94 |
Cycas micholitzii | 28,901 | 4 | 3.83% | 0.48% | 0.13 |
Ginkgo biloba | 30,404 | 5 | 4.02% | 0.6% | 0.15 |
Populus trichocarpa | 41,434 | 68 | 5.48% | 8.2% | 1.5 |
Arabidopsis thaliana | 27,416 | 20 | 3.63% | 2.41% | 0.66 |
Oryza sativa ssp. japonica | 40,738 | 33 | 5.39% | 3.98% | 0.74 |
Amborella trichopoda | 26,931 | 18 | 3.56% | 2.17% | 0.61 |
Physcomitrella patens | 32,400 | 11 | 4.29% | 1.33% | 0.31 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Picea | 3 | 115,975 | 185 | 15.35% | 22.32% | 1.45 |
Pinus | 3 | 196,978 | 361 | 26.07% | 43.55% | 1.67 |
Pinaceae | 7 | 462,670 | 636 | 61.24% | 76.72% | 1.25 |
Gymnosperms | 11 | 586,586 | 679 | 77.64% | 81.91% | 1.05 |
Angiosperms | 4 | 136,519 | 139 | 18.07% | 16.77% | 0.93 |
Embryophyta | 16 | 755,505 | 829 | 100% | 100% | 1 |