Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03D000053
- Gene count gene family
- 864
- Total coding gene count
- 755,505
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Picea glauca | 28,909 | 61 | 3.83% | 7.06% | 1.84 |
Picea abies | 66,632 | 56 | 8.82% | 6.48% | 0.73 |
Picea sitchensis | 20,434 | 45 | 2.7% | 5.21% | 1.93 |
Pinus pinaster | 76,426 | 91 | 10.12% | 10.53% | 1.04 |
Pinus sylvestris | 36,106 | 36 | 4.78% | 4.17% | 0.87 |
Pinus taeda | 84,446 | 132 | 11.18% | 15.28% | 1.37 |
Pseudotsuga menziesii | 149,717 | 137 | 19.82% | 15.86% | 0.8 |
Gnetum montanum | 32,549 | 13 | 4.31% | 1.5% | 0.35 |
Taxus baccata | 32,062 | 26 | 4.24% | 3.01% | 0.71 |
Cycas micholitzii | 28,901 | 36 | 3.83% | 4.17% | 1.09 |
Ginkgo biloba | 30,404 | 53 | 4.02% | 6.13% | 1.52 |
Populus trichocarpa | 41,434 | 51 | 5.48% | 5.9% | 1.08 |
Arabidopsis thaliana | 27,416 | 35 | 3.63% | 4.05% | 1.12 |
Oryza sativa ssp. japonica | 40,738 | 33 | 5.39% | 3.82% | 0.71 |
Amborella trichopoda | 26,931 | 26 | 3.56% | 3.01% | 0.85 |
Physcomitrella patens | 32,400 | 33 | 4.29% | 3.82% | 0.89 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Picea | 3 | 115,975 | 162 | 15.35% | 18.75% | 1.22 |
Pinus | 3 | 196,978 | 259 | 26.07% | 29.98% | 1.15 |
Pinaceae | 7 | 462,670 | 558 | 61.24% | 64.58% | 1.05 |
Gymnosperms | 11 | 586,586 | 686 | 77.64% | 79.4% | 1.02 |
Angiosperms | 4 | 136,519 | 145 | 18.07% | 16.78% | 0.93 |
Embryophyta | 16 | 755,505 | 864 | 100% | 100% | 1 |