Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03D000008
- Gene count gene family
- 3031
- Total coding gene count
- 755,505
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Picea glauca | 28,909 | 119 | 3.83% | 3.93% | 1.03 |
Picea abies | 66,632 | 315 | 8.82% | 10.39% | 1.18 |
Picea sitchensis | 20,434 | 85 | 2.7% | 2.8% | 1.04 |
Pinus pinaster | 76,426 | 219 | 10.12% | 7.23% | 0.71 |
Pinus sylvestris | 36,106 | 91 | 4.78% | 3% | 0.63 |
Pinus taeda | 84,446 | 474 | 11.18% | 15.64% | 1.4 |
Pseudotsuga menziesii | 149,717 | 410 | 19.82% | 13.53% | 0.68 |
Gnetum montanum | 32,549 | 128 | 4.31% | 4.22% | 0.98 |
Taxus baccata | 32,062 | 150 | 4.24% | 4.95% | 1.17 |
Cycas micholitzii | 28,901 | 114 | 3.83% | 3.76% | 0.98 |
Ginkgo biloba | 30,404 | 110 | 4.02% | 3.63% | 0.9 |
Populus trichocarpa | 41,434 | 250 | 5.48% | 8.25% | 1.51 |
Arabidopsis thaliana | 27,416 | 180 | 3.63% | 5.94% | 1.64 |
Oryza sativa ssp. japonica | 40,738 | 194 | 5.39% | 6.4% | 1.19 |
Amborella trichopoda | 26,931 | 100 | 3.56% | 3.3% | 0.93 |
Physcomitrella patens | 32,400 | 92 | 4.29% | 3.04% | 0.71 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Picea | 3 | 115,975 | 519 | 15.35% | 17.12% | 1.12 |
Pinus | 3 | 196,978 | 784 | 26.07% | 25.87% | 0.99 |
Pinaceae | 7 | 462,670 | 1,713 | 61.24% | 56.52% | 0.92 |
Gymnosperms | 11 | 586,586 | 2,215 | 77.64% | 73.08% | 0.94 |
Angiosperms | 4 | 136,519 | 724 | 18.07% | 23.89% | 1.32 |
Embryophyta | 16 | 755,505 | 3,031 | 100% | 100% | 1 |