Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03D000004
- Gene count gene family
- 6388
- Total coding gene count
- 755,505
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Picea glauca | 28,909 | 315 | 3.83% | 4.93% | 1.29 |
Picea abies | 66,632 | 844 | 8.82% | 13.21% | 1.5 |
Picea sitchensis | 20,434 | 188 | 2.7% | 2.94% | 1.09 |
Pinus pinaster | 76,426 | 863 | 10.12% | 13.51% | 1.33 |
Pinus sylvestris | 36,106 | 470 | 4.78% | 7.36% | 1.54 |
Pinus taeda | 84,446 | 1,873 | 11.18% | 29.32% | 2.62 |
Pseudotsuga menziesii | 149,717 | 1,453 | 19.82% | 22.75% | 1.15 |
Gnetum montanum | 32,549 | 108 | 4.31% | 1.69% | 0.39 |
Taxus baccata | 32,062 | 131 | 4.24% | 2.05% | 0.48 |
Cycas micholitzii | 28,901 | 35 | 3.83% | 0.55% | 0.14 |
Ginkgo biloba | 30,404 | 15 | 4.02% | 0.23% | 0.06 |
Populus trichocarpa | 41,434 | 21 | 5.48% | 0.33% | 0.06 |
Arabidopsis thaliana | 27,416 | 8 | 3.63% | 0.13% | 0.04 |
Oryza sativa ssp. japonica | 40,738 | 7 | 5.39% | 0.11% | 0.02 |
Amborella trichopoda | 26,931 | 30 | 3.56% | 0.47% | 0.13 |
Physcomitrella patens | 32,400 | 27 | 4.29% | 0.42% | 0.1 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Picea | 3 | 115,975 | 1,347 | 15.35% | 21.09% | 1.37 |
Pinus | 3 | 196,978 | 3,206 | 26.07% | 50.19% | 1.93 |
Pinaceae | 7 | 462,670 | 6,006 | 61.24% | 94.02% | 1.54 |
Gymnosperms | 11 | 586,586 | 6,295 | 77.64% | 98.54% | 1.27 |
Angiosperms | 4 | 136,519 | 66 | 18.07% | 1.03% | 0.06 |
Embryophyta | 16 | 755,505 | 6,388 | 100% | 100% | 1 |