acc:M91183 src: str: ta1:Eukaryota Metazoa Chordata Craniata Vertebrata Chondrichthyes Elasmobranchii Squalea Notidanoidea Hexanchiformes Hexanchoidei Notorynchidae Notorynchus chg: rem: aut:Bernardi G., Powers D.A. ttl:Molecular phylogeny of the prickly shark, Echinorhinus cookei, based on a nuclear (18S rRNA) and a mitochondrial (cytochrome b) gene jou:Mol. Phylogenet. Evol. dat:1992 vol:1 pgs:161-167 mty:SSU seq:Notorynchus cepedianus M91183 -------------------------------------------------------------------------------- --------------------------ooo[oo-ooo]o-----oo[o-ooo]-[o-oooo]-o[AG{--C}AUA--UGCU ]----[UGU-C]UC-A-AA---GAUUAA--[GC-C{A--}UGC]-A--U[GU{C-UA--A}GU{A-CAC}A-C]GG---- -------------------------------------------------------------------------------- -CCGGUA--C---------------------------------------------------------------------- -------------------------------------------------A[GU{--GAA}AC{-U}GC]G-AA--UGG-[ C-UC]-AUUA---AAU-[C-AG{--UU}AU{---GG}U-U{CC--UU}UG--A]-UCGCUCCA----------------- -------AACG---------------------UU-ACU-[UG{G--AUAA}C-{UG}-UGG]-UAAU-U-[CU--A-{GA }G{CUAAUA-}CA]-UGCCA----------------ACGAG[CG--C{UG----A}CC]--------------------- ---------------------CUCC------------------------------------------------------- -------------------------------------------------------------------------------- --------------------[GG{G------AU}G-CG]U--------------------------------------GC AU--[UU-AU{CA-GACCA---A--A}ACC{-AAU---------}CGG-G]----------------------------- ------------------------------CUUG---------------------------------------------- ---[CC-CG{-------GCAGCUUU-}-G-GU{---GA--CUCUA--G}-AUA-A]CCUCGGG----------------- --C-UGA-[U-CGC{A--------}CGUC]-------------------------------------------------- ----------------------------------------------------------------CUCG------------ -------------------------------------------------------------------------------- ----------------U[GAC---GGCG--A]CG---------------------------------------------- AC[U-CA{UUC---}G-AA-U{GU-}CU-G]------C[CCU-(A)------U{C-----A-}ACU{UUC--G}AU-GG- UA]-CUUU----CUG-UG-CC[UACCA-----UGGU{-G--ACC}A-(C)GGG]U------------AA[CGGG-GAAU] -CAGG--[GUUC{-GAU}U-CC-G^GA-G]-A[GG-(G)AG-C]C-UGA-GAA-ACG[G-CU-(A)CC]A-[C(A)UC]C -AA------G[G-A-(A)G]GC--A[GC-A-GGC]---GCGCAAA--[U{U}ACC{-C-AC}UCC-C]GA----CUC--- [GG-GG{A---}GGUA]G-U[GA-CG]-AAA-AAU-------AA[CAA---U--ACA-G-G{-A---}CUC]-------- --------------------------UUUC---------------------------------[GAG{GC}CC-UG--UA {A}UU-G]G-----------------------------------------AAUGA[GU]-AC-ACUUU--AAA-UC---- -------------------------------------------------------------------------------- -------------------------------------------------------CUUUA-[AC]GAG-G-AU--CUA[U UGG-AG]-[GG-C]-AAG---U[C-UGG]C--G-CCAGC---A[GCC]GC-GG--UAAU--U[C----CAG^C-UCC-AA ]U[A-G-CGU-AU{A-}UU]AAAG-CUG--[CU(G)C(A)--G]UUA----AAAA[G(C)-U-C{GU-A}G-U-U]GGAU CUU-------[GGG(A)U{---C}G(A)G]C-------U[GG-C-GGU{C}CG-CC]----------------------- -----------------------GCGA----------------------------------------------------- [G-GCG{A--GC--------------U}ACCGC---------C]UG--A----[C(C)C---A(G)CCC]-CUGCC---- -----------------------------------------------------U[CUCGG]CG----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------C[UCC-C{U--U}GAUGCUC]--- -UUAGCU-------[G-A-GUGUC{C----U---G}GGGG]----------------------------U[CCGA{A}G] ----CGU[UUA]CU-UUGAAAAAA----U[UA]-GA[GU]G--[UUC]AAA-[GC^AGGC]------------------C G-GUC------------------[G--CC---U]GAA[UA]C--UCCAGCUA[GGA]A--[UAA^UGGAAU]-AGG---- ----------A[CC----CCG---G-UU-CU]------------------------------------------------ -------------------------------------------------------------------------------- ----------------------------[AUUUU---G]UUGG-UU---------------------UUC-[GG-AA-C- --U--GG-GG]CC------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------A-UG-AUU[AA{GA-}GGGA-C-G{GCC--GGG}GG-CA]------------UU[CG-U{-- AU}U-GUG-C-CG{--CU-A}GAG]-----GUGAAA-----[UUC{UUG-GAC}CGG-CGCA{-AG-}ACG]GACA-AA- --A[GC]--GAAA---[GC]A----UU[UGC-C{AAGAA}U-GUUU{U-}C{-A-}UU]--------------------- ---------------------------------------------[AAU{-CAA---}GA-(A)C]GA--------AA[G U-CGGAG{-GUU-}C{G-AA}G-ACG]-----AU-CA--GAUAC-----[C-GUC{-G-UA}GUUC-CG-AC]-CAU-AA AC-GAU[GCC{-A}AC]U-[AGC{G--A}U(C)CGGC{-GGC-----}GU-UAU]------------------------- ----------------------------------------------------UCCC------------------------ -------------------------------------------------------------------------------- ----------------------------------------[AUGAC{C-C-}GCC-G(A)G{C---A}GCU]-UCC---- -----[GG]-GAAA--[C-C]-A----AA[GU{C-UUUG-}GGU]U-[C(C)G(G)--GG]G-G[AG-U{A---}UGG-U U]-GCA-A-[AGCU--G{AA}AC-U]UAA[A------GGA]A-U[UG-AC{G}GAA--GGGC-A]---CCA-CCA--[G- --G-A-GU]--GG[AG-C(C)U-GC-GGC]--UU-AA---[UUU-G]-ACUCAA-CA-[C-GG-G]---AA-ACC-U-CA -[CC-CGG-(C)C]--CG-GA-[CA--CG{-GAA-A----G}G-AUUGA(C)A-GA]U-UG-A----------------- -------------------------------------------------------------------------------- ----------------------------------------UA-GC[UCU(U)UC-{U--C}GA-UU{C----}UGUG]GG -----U[GG{-U}GG{UG-}CA-UG-GCCG--UU-(C)UU]-A[GU-U]G---G-[UG-GA]--GCGA-[UUUG]U--[C {U}G-G]-UUAAUU-[CC-G]AU-------AACG-[AA-C]GAG------AC[UC]C-UC--[C(A)U{-G}CUAA{-AU }A-GU-UA-C-G-CGA---------------CC]CC-------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------CGAG----------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------C[GGUC{C}GCGU{-----------------------------------C-C}AA--CU {U----C}U-U-AGA(G)-G]G--A-CA-A[GUG----------G-C]-------------------GUAUA-------- ---[G-CCA-C]-AC--G--A--GA-U--U---[G-A]G-C[AA(U)-AAC{A--}GG-UC{-U-G--UG}A-UGC-CC- U]UAGA---U[G-(U)CC-GGG]-GCU-[GC{A-}CGCG(C)G-CU]AC--ACU[G---AA-UGG{AU-CAG}C---G{U }G]UG--------------------------------------------------------------------------- -------------------U----------CUAC[CCUA--CGC-C]--GCCA-[G-GUG-U----GGG]----UAAC-- ----[CCG{U-----UGAACC}CCA-UU-C]G-U-GAU-AG--------GGA-U-[UGG-GAA]U--------------- --------------------------------UG--CAAUU--AU-[UUCCC-A]U-----GAAC-GAGG-A[AUU-CC] CAG-UA[AG--UG----CG-GG]-U---CAUAA----G-[CUC-GCGU-U]-GAUUAA-GUC-CC[U-GCCCUU-UGU{A -}CA]CACC-G--CCCG-UCG---C[U--AC-U(A)--C-C{GA--}U{U}--GGAUGG{CU-U}AG--U{GA------- }GG-UC(C)-UC{-GGA-}UCGG-C{C}CCGCCG-G(A)GUCG]-----------------------------GCAA--- -----------------------------------------[CGGC(C)UU---G-GC---------------GG{-AG- C}GCCGA{-GAA}G---A-(C)GA-UC{A--A}ACU--------{UGA}-CUA-UCUA{G--A}GG(A)AGU-A]A-AA- G-UCGU-AAC-AA-GG[UUU-CCoo-ooo]oooo-[ooo-ooo-oooo]oooooooo----------------------- -------------------------------------------------------------------------------- ---------------* //