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Tetranychus urticae


Gene ID
tetur95g00080
Locus
tetur95g00080
Functional Description
scavenger receptor cysteine-rich protein
Gene Type
protein-coding gene
Contig
scaffold_95
Last Modified On
04 August 2016 10h28
History

Annotator  

Name
Wannes Dermauw
Email
wannes.dermauw@ugent.be
Lab
Agrozoology (Crop Protection)
Status
active

Gene Actions  

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Gene Function 

Short Name
n/a
Alternative Names
TETUR00g09890
Definition
scavenger receptor cysteine-rich protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Read Counts 

Gene Ontology 

n/a
 

Protein Domains 


Domain IDDescriptionDatabase
G3DSA:2.10.25.10 n/a Gene3D
IPR002919 Trypsin Inhibitor-like, cysteine rich domain InterPro
SIGNAL_PEPTIDE Signal peptide region Phobius
SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. Phobius
SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. Phobius
SignalP-TM n/a SignalP_GRAM_POSITIVE
NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region Phobius
SignalP-noTM n/a SignalP_EUK
Coil n/a Coils
SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. Phobius

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
tetur40g00392 length:251 (mRNA) (n/a) (n/a)
Evalue: 5e-95 | Bitscore: 282
Identities = 178/290 (61%), Positives = 183/290 (63%), Gaps = 87/290 (30%)
Self
Show Blast
tetur95g00060 length:120 (mRNA) (n/a) (PREDICTED: similar to ECM 18) (n/a) (PREDICTED: similar to ECM 18)
Evalue: 5e-69 | Bitscore: 211
Identities = 103/103 (100%), Positives = 103/103 (100%), Gaps = 0/103 (0%)
Self
Show Blast
tetur95g00060 length:120 (mRNA) (n/a) (PREDICTED: similar to ECM 18) (n/a) (PREDICTED: similar to ECM 18)
Evalue: 5e-68 | Bitscore: 208
Identities = 103/103 (100%), Positives = 103/103 (100%), Gaps = 0/103 (0%)
Self
Show Blast
tetur40g00392 length:251 (mRNA) (n/a) (n/a)
Evalue: 1e-63 | Bitscore: 202
Identities = 96/103 (93%), Positives = 98/103 (95%), Gaps = 0/103 (0%)
Self
Show Blast
tetur22g00290 length:252 (mRNA) (n/a) (cysteine-rich trypsin inhibitor) (n/a) (PREDICTED: hypothetical protein)
Evalue: 2e-31 | Bitscore: 117
Identities = 79/205 (39%), Positives = 94/205 (46%), Gaps = 75/205 (37%)
Self
Show Blast
tetur22g00290 length:252 (mRNA) (n/a) (cysteine-rich trypsin inhibitor) (n/a) (PREDICTED: hypothetical protein)
Evalue: 7e-31 | Bitscore: 116
Identities = 57/100 (57%), Positives = 71/100 (71%), Gaps = 3/100 (3%)
Self
Show Blast
tetur22g00260 length:141 (mRNA) (n/a) (PREDICTED: similar to ECM 18)
Evalue: 2e-24 | Bitscore: 96
Identities = 54/131 (41%), Positives = 68/131 (52%), Gaps = 15/131 (11%)
Self
Show Blast
tetur40g00391 length:260 (mRNA) (n/a) (n/a)
Evalue: 2e-18 | Bitscore: 81
Identities = 57/167 (34%), Positives = 76/167 (46%), Gaps = 18/167 (11%)
Self
Show Blast
tetur40g00200 length:336 (mRNA) (n/a) (PREDICTED: similar to ECM 18)
Evalue: 2e-17 | Bitscore: 79
Identities = 50/126 (40%), Positives = 68/126 (54%), Gaps = 17/126 (13%)
Self
Show Blast
tetur95g00090 length:248 (mRNA) (n/a) (PREDICTED: similar to ECM 18)
Evalue: 1e-15 | Bitscore: 73
Identities = 47/123 (38%), Positives = 57/123 (46%), Gaps = 17/123 (14%)
Self
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

CDS  

Locus ID
tetur95g00080
Redo Blast
CDS Length
750 nucleotides
CDS Sequence

Protein 

Locus ID
tetur95g00080
Redo Blast
Protein Length
250 aminoacids
Protein Sequence
Signal Peptide
na
Subcellular Localisation
na

Associated ESTs/cDNAs 

n/a
 
 
General Comments
n/a"20160216000000