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Tetranychus urticae


Gene ID
tetur40g00392
Locus
tetur40g00392
Functional Description
Trypsin Inhibitor-like, cysteine rich domain
Gene Type
protein-coding gene
Contig
scaffold_40
Last Modified On
19 February 2016 0h00
History

Annotator  

Name
Zaichao Zhang
Email
zzhan367@uwo.ca
Lab
UWO.Canada & VIB.UGent.Belgium
Status
active

Gene Actions  

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Gene Function 

Short Name
n/a
Alternative Names
TETUR03g38300
Definition
Trypsin Inhibitor-like, cysteine rich domain
Additional Functional Description
gene in intron
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Read Counts 

Gene Ontology 

n/a
 

Protein Domains 


Domain IDDescriptionDatabase
G3DSA:2.10.25.10 n/a Gene3D
IPR002919 Trypsin Inhibitor-like, cysteine rich domain InterPro
SIGNAL_PEPTIDE Signal peptide region Phobius
SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. Phobius
SignalP-TM n/a SignalP_GRAM_POSITIVE
SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. Phobius
NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region Phobius
SignalP-noTM n/a SignalP_GRAM_NEGATIVE
SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. Phobius

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_015793765.1 PREDICTED: uncharacterized protein LOC107370284 [Tetranychus urticae]
Evalue: 3e-150 | Bitscore: 432
Identities = 250/250 (100%), Positives = 250/250 (100%), Gaps = 0/250 (0%)
NCBI
Show Blast
tetur22g00290 length:252 (mRNA) (n/a) (cysteine-rich trypsin inhibitor) (n/a) (PREDICTED: hypothetical protein)
Evalue: 2e-78 | Bitscore: 239
Identities = 151/256 (59%), Positives = 178/256 (70%), Gaps = 11/256 (4%)
Self
Show Blast
tetur22g00290 length:252 (mRNA) (n/a) (cysteine-rich trypsin inhibitor) (n/a) (PREDICTED: hypothetical protein)
Evalue: 2e-78 | Bitscore: 239
Identities = 151/256 (59%), Positives = 178/256 (70%), Gaps = 11/256 (4%)
Self
Show Blast
tetur22g00290 length:252 (mRNA) (n/a) (cysteine-rich trypsin inhibitor) (n/a) (PREDICTED: hypothetical protein)
Evalue: 2e-78 | Bitscore: 239
Identities = 151/256 (59%), Positives = 178/256 (70%), Gaps = 11/256 (4%)
Self
Show Blast
tetur22g00290 length:252 (mRNA) (n/a) (cysteine-rich trypsin inhibitor) (n/a) (PREDICTED: hypothetical protein)
Evalue: 2e-78 | Bitscore: 239
Identities = 151/256 (59%), Positives = 178/256 (70%), Gaps = 11/256 (4%)
Self
Show Blast
tetur95g00060 length:120 (mRNA) (n/a) (PREDICTED: similar to ECM 18) (n/a) (PREDICTED: similar to ECM 18)
Evalue: 1e-64 | Bitscore: 199
Identities = 96/103 (93%), Positives = 98/103 (95%), Gaps = 0/103 (0%)
Self
Show Blast
tetur95g00060 length:120 (mRNA) (n/a) (PREDICTED: similar to ECM 18) (n/a) (PREDICTED: similar to ECM 18)
Evalue: 1e-64 | Bitscore: 199
Identities = 96/103 (93%), Positives = 98/103 (95%), Gaps = 0/103 (0%)
Self
Show Blast
tetur95g00060 length:250 (mRNA) (n/a) (PREDICTED: similar to ECM 18) (n/a) (PREDICTED: similar to ECM 18)
Evalue: 9e-63 | Bitscore: 199
Identities = 96/103 (93%), Positives = 98/103 (95%), Gaps = 0/103 (0%)
Self
Show Blast
tetur95g00060 length:250 (mRNA) (n/a) (PREDICTED: similar to ECM 18) (n/a) (PREDICTED: similar to ECM 18)
Evalue: 9e-63 | Bitscore: 199
Identities = 96/103 (93%), Positives = 98/103 (95%), Gaps = 0/103 (0%)
Self
Show Blast
XP_015790595.1 PREDICTED: keratinocyte proline-rich protein-like [Tetranychus urticae]
Evalue: 2e-58 | Bitscore: 197
Identities = 126/213 (59%), Positives = 148/213 (69%), Gaps = 8/213 (4%)
NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
3

CDS  

Locus ID
tetur40g00392
Redo Blast
CDS Length
753 nucleotides
CDS Sequence

Protein 

Locus ID
tetur40g00392
Redo Blast
Protein Length
251 aminoacids
Protein Sequence
Signal Peptide
na
Subcellular Localisation
na

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDCCZA11206.b1 Support ModelN More Info
CommentEST is not matching the given gene model. EST is mapped on the opposite strand
EST IDCCZA11206.g1 Support ModelN More Info
CommentEST is not matching the given gene model. EST is mapped on the opposite strand
EST IDCCZA1199.b1 Support ModelN More Info
CommentEST is inconsistent with the given gene model. EST is mapped on the opposite strand of the predicted model
EST IDCCZA1199.g1 Support ModelN More Info
CommentEST is not matching the given gene model. EST is mapped on the opposite strand
EST IDCCZA2416.b1 Support ModelN More Info
CommentEST is inconsistent with the given gene model. EST is mapped on the opposite strand of the predicted model
EST IDCCZA2416.g1 Support ModelN More Info
CommentEST is not matching the given gene model. EST is mapped on the opposite strand
EST IDCCZA9878.b1 Support ModelN More Info
CommentEST is inconsistent with the given gene model. EST is mapped on the opposite strand of the predicted model
EST IDCCZA9878.g1 Support ModelN More Info
CommentEST is not matching the given gene model. EST is mapped on the opposite strand
EST IDCCZB14301.b1 Support ModelN More Info
CommentEST is inconsistent with the given gene model. EST is mapped on the opposite strand of the predicted model
EST IDCCZB14301.g1 Support ModelN More Info
CommentEST is not matching the given gene model. EST is mapped on the opposite strand
EST IDCCZB1855.b1 Support ModelN More Info
CommentEST is inconsistent with the given gene model. EST is mapped on the opposite strand of the predicted model
EST IDCCZB1855.g1 Support ModelN More Info
CommentEST is not matching the given gene model. EST is mapped on the opposite strand
EST IDCCZB7049.b1 Support ModelY More Info
EST IDCCZB7049.g1 Support ModelY More Info
CommentEST is mapped on the opposite strand of the predicted model
EST IDCCZA11206.b1 Support ModelN More Info
CommentEST is not matching the given gene model. EST is mapped on the opposite strand
EST IDCCZA11206.g1 Support ModelN More Info
CommentEST is not matching the given gene model. EST is mapped on the opposite strand
EST IDCCZA1199.b1 Support ModelN More Info
CommentEST is inconsistent with the given gene model. EST is mapped on the opposite strand of the predicted model
EST IDCCZA1199.g1 Support ModelN More Info
CommentEST is not matching the given gene model. EST is mapped on the opposite strand
EST IDCCZA2416.b1 Support ModelN More Info
CommentEST is inconsistent with the given gene model. EST is mapped on the opposite strand of the predicted model
EST IDCCZA2416.g1 Support ModelN More Info
CommentEST is not matching the given gene model. EST is mapped on the opposite strand
EST IDCCZA9878.b1 Support ModelN More Info
CommentEST is inconsistent with the given gene model. EST is mapped on the opposite strand of the predicted model
EST IDCCZA9878.g1 Support ModelN More Info
CommentEST is not matching the given gene model. EST is mapped on the opposite strand
EST IDCCZB14301.b1 Support ModelN More Info
CommentEST is inconsistent with the given gene model. EST is mapped on the opposite strand of the predicted model
EST IDCCZB14301.g1 Support ModelN More Info
CommentEST is not matching the given gene model. EST is mapped on the opposite strand
EST IDCCZB1855.b1 Support ModelN More Info
CommentEST is inconsistent with the given gene model. EST is mapped on the opposite strand of the predicted model
EST IDCCZB1855.g1 Support ModelN More Info
CommentEST is not matching the given gene model. EST is mapped on the opposite strand
EST IDCCZB7049.b1 Support ModelY More Info
EST IDCCZB7049.g1 Support ModelY More Info
CommentEST is mapped on the opposite strand of the predicted model
 
General Comments
n/a"20160216000000