Tetranychus urticae

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Protein
Est Cdna

Tetranychus urticae

Gene ID: tetur28g00340
Locus: tetur28g00340
Functional Description: RNA binding
Gene Type: protein-coding gene
Contig: scaffold_28
Last Modified On: 19 February 2016 0h00
History

Annotator
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Name: Miodrag Grbic
Email: mgrbic@uwo.ca
Lab: |UW|O, London, Ontario
Status: active

Gene Actions
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Gene Function
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Short Name: NRT4
Alternative Names: TETUR04g00300
Definition: RNA binding
Additional Functional Description: n/a
Pubmed ID: n/a
EC Number: n/a
KOGid: n/a

Read Counts
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Gene Ontology
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Cellular Component: n/a
Molecular Function: 1.

GO:0003676

nucleic acid binding

2.

GO:0005515

protein binding
Biological Process: n/a

Protein Domains
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Domain ID	Description	Database
IPR003165	Piwi domain	InterPro
IPR003100	PAZ domain	InterPro
IPR032474	Protein argonaute, N-terminal	InterPro
G3DSA:2.170.260.10	n/a	Gene3D
PTHR22891	n/a	PANTHER
IPR012337	Ribonuclease H-like domain	InterPro
G3DSA:3.40.50.2300	n/a	Gene3D
PTHR22891:SF28	n/a	PANTHER

Protein Homologs
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View in Jalview

ProteinID	Description / BlastScore	Database	Actions
XP_015792238.1	PREDICTED: piwi-like protein 1 [Tetranychus urticae] Evalue: 0.0 \| Bitscore: 1650 Identities = 803/803 (100%), Positives = 803/803 (100%), Gaps = 0/803 (0%)	NCBI	Show Blast
tetur28g00450	length:797 (mRNA) (NRT5) (RNA binding) Evalue: 0.0 \| Bitscore: 1379 Identities = 635/776 (82%), Positives = 716/776 (92%), Gaps = 0/776 (0%)	Self	Show Blast
tetur28g00450	length:797 (mRNA) (NRT5) (RNA binding) Evalue: 0.0 \| Bitscore: 1379 Identities = 635/776 (82%), Positives = 716/776 (92%), Gaps = 0/776 (0%)	Self	Show Blast
tetur28g00450	length:795 (mRNA) (NRT5) (RNA binding) Evalue: 0.0 \| Bitscore: 1379 Identities = 635/776 (82%), Positives = 716/776 (92%), Gaps = 0/776 (0%)	Self	Show Blast
tetur28g00450	length:795 (mRNA) (NRT5) (RNA binding) Evalue: 0.0 \| Bitscore: 1379 Identities = 635/776 (82%), Positives = 716/776 (92%), Gaps = 0/776 (0%)	Self	Show Blast
XP_015792164.1	PREDICTED: piwi-like protein 1 [Tetranychus urticae] Evalue: 0.0 \| Bitscore: 1379 Identities = 635/776 (82%), Positives = 716/776 (92%), Gaps = 0/776 (0%)	NCBI	Show Blast
tetur17g03380	length:722 (mRNA) (NRT6) (RNA binding) Evalue: 0.0 \| Bitscore: 1030 Identities = 531/760 (70%), Positives = 584/760 (77%), Gaps = 94/760 (12%)	Self	Show Blast
tetur17g03380	length:722 (mRNA) (NRT6) (RNA binding) Evalue: 0.0 \| Bitscore: 1030 Identities = 531/760 (70%), Positives = 584/760 (77%), Gaps = 94/760 (12%)	Self	Show Blast
tetur06g05600	length:822 (mRNA) (NRT3) (PIWI-related, RNA binding) (NRT3) (RNA binding) Evalue: 0.0 \| Bitscore: 839 Identities = 384/771 (50%), Positives = 554/771 (72%), Gaps = 8/771 (1%)	Self	Show Blast
tetur06g05600	length:822 (mRNA) (NRT3) (PIWI-related, RNA binding) (NRT3) (RNA binding) Evalue: 0.0 \| Bitscore: 839 Identities = 384/771 (50%), Positives = 554/771 (72%), Gaps = 8/771 (1%)	Self	Show Blast

Gene Structure
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View in GenomeView|View in Artemini

Download gene in EMBL format

Structure: ;145106..146791,146870..147044,147122..147555,147633..147749;147750..147864
Sequence Type: mRNA
Strand: +
Structure Quality: 2

CDS
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Locus ID: tetur28g00340
: Redo Blast
CDS Length: 2412 nucleotides
CDS Sequence: ATGTCCACAAGTGGCTCAGCTCCTGTTCGTGCTAGAGGCAGAGCATCATCATCACATCGACGTTTTGTCAGACCTCCTCGCCAGTTTGCTGCTGAAGCACCAATACGGACAATTCCTCCGGATTTAATTACCAAGGTGGGTCAAGGAGGAGCACCTGTTCGTCTTTATTCAAATCATTTTTTGATGATAACTCCTACCAATGTGATTATCTATGGATATCACGTAAATTTTGACCCGATTGTTGAGTCTCCTAAAATCAGAAGAGAGCTTATTCATTCACATCGCGAGGTATTTGACAATACTTACATTTACGACGGTGGTGCTGATATAAAGGCTTTAAGAGAAATCGCAGAGCCATTGAGCCTTCAAGCCGTATGTTCACACAATAGGCAGAGTGTTACACTAACTATCAAGCCCACTGGAAAGATTTCATGGGGCCATCCAGAAATGCTGCGTCTTTACAATACACAGATGCGACGTAATCTCAAGTTAATTGGAATGATCCAGATCGGGAACAATTTTTTCAACCAAGCTGAAAGAAAAGACATTCCTGACCATCGAGTTGAAGTCTGGCCTGGTATATTGACTGCTATCAATGAACATGATGGAGGTATAATGACTGTCATCAGCTGCTTACATAAAATTATAAGAAGAGACTCAGCTCTTGACATATTAAAGCGGCTTTGGCAACACGACAAACAATTCTTTAGAAATAATGCTCGTCGTGAACTAAGTGGCTCAATTATTATGTCTAGTTACAATAAAAAGACTTACCGGATTGATGACATTATTTTCGATAAAAATCCAGTCACCTATCGCTTTGATAAACAAGGTACATCAATCTCATTAAAAGATTATTATAAAGATCAATATACAATTGAAGTAAGAGATGATGCCCAACCTCTCCTTTTGGTTAAACCAACTGAGAAACAACAGCGCGGAGGAATTAAACGAGATATTGTCCTTATACCTGAACTGTGTATATTAACTGGCATCACTGAGAGCATGAAGAATGACATGTCATTTCGACGTGAATTGGATCAACACATTCGCCTGGATCCAGTTGAAAGGCTAAATATAATGAAAAAAAGTGTGGAAAAAATAATTAACAGCGAACAAGCTCGAGCCGAAATGGAACAATGGAACATAGCATTAGATCCTTACCCAGCTGAAGTAAATGGAAGAGTTCTGCCTCCTGAACAGATTTTCCTGACTGACGAAACCCGTGGAATTCCATATGAACAACAATCTGGATCTTTTGATTCCCTTATAAGATCTGAACAGCTGATTAAACCGGTTGCCTTGGAATATTGGGTGATTGTTGCCCCTATGCGTGAAAGGGGTACAGTTGAACAGTATCTTGATTCCTTGGTAAACGTTGCAAGACCACTAGGAATCAAACTCGATGCTCCTAAATTTTATTGGCTTGAAAATGATCGAACATCAACTTATATTGAGACTTGTCGTAAAATTCCAAAAGGGGCTAAAATGGTTCATGTTGTTGTACCTAACAACAATCGAGAGCGATACAATACAATCAAACGGTATTTTTGCTGCGAACAACCCTGTCCAACTCAAGTTTTAACTCTCAGAGTCTTGAATAAAAAGCAACTTACAATTTCTACTAAACTTGTGCTTCAAATGTCCATCAAAATGGGTGCTCAAGCATGGTCAGTCCATATTCCGGCTCAAAGTACAATGTTTGTTGGTTTTAATACTTGTAAAGACACTGCTAAAAGAGGCCGAACCGTTGGAGCTTTTGTTTGTAGCACAAACGCAAAATCAACTTCATGGTTTTCCCAAGTTTCTTATCATAAAACATTCGAAGAAATGTCTTCTAATTTTACAGCCAATCTCAAAAGTGGACTGAAAGCTTGGAATCGAGAAAACAACCGTTTTCCCGAGCGTATAATTATCTATCGTGATGGTGTTTCAGAGGGACAAATTGGCTTTATTTATAAAACCGAAGTTAAGAAAATATCAGCCCTTCTTGGTGAACATCCAGACCTCAAAGATGCTGGAATTGCATTCACAATTGTTAATAAGCGAGTTAACGCAAGATTTTTCTTGAGACCAGGTCCAAATGACCCTGTAAAGAATCCCATTGCCGGTACTGTCGTCGATTCAGTTGTAACACGAAAGGAGAGATACGATTTTTATCTAATCAGTCAATCAGTTCGATTTGGAACCGTCAATCCAACCATGTATAACATAATAAAGGATACCACTCGATGGAAACCGATCCATCATCAATTACTGGCCTACAAATTATGTCATCTTTATTATAATTGGACTGGTACAATTTCTGTTCCAGCGCCATGTCATTATGCATATAAATTGGCCTTTTTGATTGGTAATTGCATCCATCAGGAGCCTGATCATACTTTAGCAAACCAACTCTACTTTTTATAA

Protein
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Locus ID: tetur28g00340
: Redo Blast
Protein Length: 804 aminoacids
Protein Sequence: MSTSGSAPVRARGRASSSHRRFVRPPRQFAAEAPIRTIPPDLITKVGQGGAPVRLYSNHFLMITPTNVIIYGYHVNFDPIVESPKIRRELIHSHREVFDNTYIYDGGADIKALREIAEPLSLQAVCSHNRQSVTLTIKPTGKISWGHPEMLRLYNTQMRRNLKLIGMIQIGNNFFNQAERKDIPDHRVEVWPGILTAINEHDGGIMTVISCLHKIIRRDSALDILKRLWQHDKQFFRNNARRELSGSIIMSSYNKKTYRIDDIIFDKNPVTYRFDKQGTSISLKDYYKDQYTIEVRDDAQPLLLVKPTEKQQRGGIKRDIVLIPELCILTGITESMKNDMSFRRELDQHIRLDPVERLNIMKKSVEKIINSEQARAEMEQWNIALDPYPAEVNGRVLPPEQIFLTDETRGIPYEQQSGSFDSLIRSEQLIKPVALEYWVIVAPMRERGTVEQYLDSLVNVARPLGIKLDAPKFYWLENDRTSTYIETCRKIPKGAKMVHVVVPNNNRERYNTIKRYFCCEQPCPTQVLTLRVLNKKQLTISTKLVLQMSIKMGAQAWSVHIPAQSTMFVGFNTCKDTAKRGRTVGAFVCSTNAKSTSWFSQVSYHKTFEEMSSNFTANLKSGLKAWNRENNRFPERIIIYRDGVSEGQIGFIYKTEVKKISALLGEHPDLKDAGIAFTIVNKRVNARFFLRPGPNDPVKNPIAGTVVDSVVTRKERYDFYLISQSVRFGTVNPTMYNIIKDTTRWKPIHHQLLAYKLCHLYYNWTGTISVPAPCHYAYKLAFLIGNCIHQEPDHTLANQLYFL*
Signal Peptide: na
Subcellular Localisation: na

Associated ESTs/cDNAs
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View in GenomeView|View in Artemini

EST ID	CCZB4197.b1	Support Model	Y	More Info
Mapping Location	146390..146791,146870..147044,147122..147253		Strand +

EST ID	CCZB4197.g1	Support Model	Y	More Info
Mapping Location	146984..147044,147122..147555,147633..147864		Strand +

EST ID	Tetur28g00380	Support Model	Y	More Info
Mapping Location	145106..146791,146870..147044,147122..147555,147633..147749		Strand +

EST ID	CCZB4197.b1	Support Model	Y	More Info
Mapping Location	146390..146791,146870..147044,147122..147253		Strand +

EST ID	CCZB4197.g1	Support Model	Y	More Info
Mapping Location	146984..147044,147122..147555,147633..147864		Strand +

EST ID	Tetur28g00380	Support Model	Y	More Info
Mapping Location	145106..146791,146870..147044,147122..147555,147633..147749		Strand +

General Comments: n/a"20160216000000

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