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Tetranychus urticae


Gene ID
tetur22g01640
Locus
tetur22g01640
Functional Description
Zinc finger, RING/FYVE/PHD-type
Gene Type
protein-coding gene
Contig
scaffold_22
Last Modified On
19 February 2016 0h00
History

Annotator  

Name
Pierre Rouzé
Email
pierre.rouze@psb.ugent.be
Lab
VIB U.Gent
Status
active

Gene Actions  

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Gene Function 

Short Name
Rank-5
Alternative Names
TETUR04g39710
Definition
Zinc finger, RING/FYVE/PHD-type
Additional Functional Description
Rabankyrin-5 is an effector of the small GTPase Rab5 and regulates and coordinates different endocytic mechanisms; playing an important role in macropinocytosis. It regulates endocytic trafficking and retromer function through interaction with EHD1 and Vps26.-by similarity with vertebrate Rabankyrin-5)
Pubmed ID
10940552; 10092534; 15328530; 22284051
EC Number
n/a
KOGid
n/a

Read Counts 

Gene Ontology 

Cellular Component
n/a
Molecular Function
1.
protein binding

2.
metal ion binding

3.
protein binding

4.
metal ion binding

Biological Process
n/a

Protein Domains 


Domain IDDescriptionDatabase
IPR011333 SKP1/BTB/POZ domain InterPro
PF13857 Ankyrin repeats (many copies) Pfam
PTHR24189 n/a PANTHER
IPR000306 FYVE zinc finger InterPro
PTHR24189:SF34 n/a PANTHER
IPR017455 Zinc finger, FYVE-related InterPro
IPR020683 Ankyrin repeat-containing domain InterPro
IPR013083 Zinc finger, RING/FYVE/PHD-type InterPro
IPR000210 BTB/POZ domain InterPro
IPR011011 Zinc finger, FYVE/PHD-type InterPro
G3DSA:3.30.710.10 n/a Gene3D
Coil n/a Coils
IPR002110 Ankyrin repeat InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_015927276.1 PREDICTED: rabankyrin-5-like [Parasteatoda tepidariorum]
Evalue: 0.0 | Bitscore: 1303
Identities = 657/1149 (57%), Positives = 855/1149 (74%), Gaps = 21/1149 (2%)
NCBI
Show Blast
XP_013389728.1 PREDICTED: rabankyrin-5-like [Lingula anatina]
Evalue: 0.0 | Bitscore: 1193
Identities = 604/1155 (52%), Positives = 818/1155 (71%), Gaps = 20/1155 (2%)
NCBI
Show Blast
XP_011435221.1 PREDICTED: rabankyrin-5-like isoform X2 [Crassostrea gigas]
Evalue: 0.0 | Bitscore: 1184
Identities = 606/1164 (52%), Positives = 820/1164 (70%), Gaps = 35/1164 (3%)
NCBI
Show Blast
XP_013405409.1 PREDICTED: rabankyrin-5-like [Lingula anatina]
Evalue: 0.0 | Bitscore: 1182
Identities = 602/1155 (52%), Positives = 819/1155 (71%), Gaps = 20/1155 (2%)
NCBI
Show Blast
XP_011435220.1 PREDICTED: rabankyrin-5-like isoform X1 [Crassostrea gigas]
Evalue: 0.0 | Bitscore: 1179
Identities = 606/1168 (52%), Positives = 820/1168 (70%), Gaps = 39/1168 (3%)
NCBI
Show Blast
XP_006824333.1 PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat and FYVE domain-containing protein 1-like [Saccoglossus kowalevskii]
Evalue: 0.0 | Bitscore: 1174
Identities = 581/1161 (50%), Positives = 815/1161 (70%), Gaps = 30/1161 (3%)
NCBI
Show Blast
XP_013786703.1 PREDICTED: rabankyrin-5-like, partial [Limulus polyphemus]
Evalue: 0.0 | Bitscore: 1164
Identities = 598/1003 (60%), Positives = 752/1003 (75%), Gaps = 20/1003 (2%)
NCBI
Show Blast
XP_013045397.1 PREDICTED: rabankyrin-5 isoform X2 [Anser cygnoides domesticus]
Evalue: 0.0 | Bitscore: 1149
Identities = 579/1173 (49%), Positives = 812/1173 (69%), Gaps = 41/1173 (3%)
NCBI
Show Blast
XP_009467255.1 PREDICTED: ankyrin repeat and FYVE domain-containing protein 1 [Nipponia nippon]
Evalue: 0.0 | Bitscore: 1148
Identities = 581/1169 (50%), Positives = 809/1169 (69%), Gaps = 41/1169 (4%)
NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

CDS  

Locus ID
tetur22g01640
Redo Blast
CDS Length
3435 nucleotides
CDS Sequence

Protein 

Locus ID
tetur22g01640
Redo Blast
Protein Length
1145 aminoacids
Protein Sequence
Signal Peptide
na
Subcellular Localisation
na

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDCCIO6012.b1 Support ModelY More Info
EST IDCCIO6012.g1 Support ModelY More Info
CommentEST is mapped on the opposite strand of the predicted model
EST IDCCZB11053.b1 Support ModelY More Info
EST IDCCZB11053.g1 Support ModelY More Info
CommentEST is mapped on the opposite strand of the predicted model
EST IDCCZB11354.b1 Support ModelY More Info
EST IDCCZB11354.g1 Support ModelY More Info
CommentEST is mapped on the opposite strand of the predicted model
EST IDCCZB11980.b1 Support ModelY More Info
EST IDCCZB11980.g1 Support ModelY More Info
CommentEST is mapped on the opposite strand of the predicted model
EST IDCCZB1779.b1 Support ModelY More Info
EST IDCCZB1779.g1 Support ModelY More Info
CommentEST is mapped on the opposite strand of the predicted model
EST IDCCZB7273.b1 Support ModelY More Info
EST IDCCZB7273.g1 Support ModelY More Info
CommentEST is mapped on the opposite strand of the predicted model
EST IDEXTA4952.b0 Support ModelY More Info
CommentEST is mapped on the opposite strand of the predicted model
EST IDEXTA8404.b0 Support ModelY More Info
CommentEST is mapped on the opposite strand of the predicted model
 
General Comments
n/a"20160216000000