Logo bioIT Logo VIB Logo Ugent Logo ElixirBE
Contact:
Bioinformatics Gent
Principal Investigator:

ORCAE Technical Support:

Tetranychus urticae


Gene ID
tetur22g00290
Locus
tetur22g00290
Functional Description
Trypsin Inhibitor-like, cysteine rich domain
Gene Type
protein-coding gene
Contig
scaffold_22
Last Modified On
19 February 2016 0h00
History

Annotator  

Name
Stephane Rombauts
Email
strom@psb.ugent.be
Lab
BEG
Status
active

Gene Actions  

Sorry, only history comparison allowed for non logged in users!! Compare this version with :
Go!

Gene Function 

Short Name
n/a
Alternative Names
TETUR04g40590
Definition
Trypsin Inhibitor-like, cysteine rich domain
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Read Counts 

Gene Ontology 

n/a
 

Protein Domains 


Domain IDDescriptionDatabase
G3DSA:2.10.25.10 n/a Gene3D
IPR002919 Trypsin Inhibitor-like, cysteine rich domain InterPro
SIGNAL_PEPTIDE Signal peptide region Phobius
SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. Phobius
SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. Phobius
SignalP-TM n/a SignalP_GRAM_POSITIVE
NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region Phobius
SignalP-noTM n/a SignalP_GRAM_NEGATIVE
SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. Phobius

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_015790595.1 PREDICTED: keratinocyte proline-rich protein-like [Tetranychus urticae]
Evalue: 3e-104 | Bitscore: 315
Identities = 210/211 (99%), Positives = 211/211 (100%), Gaps = 0/211 (0%)
NCBI
Show Blast
tetur40g00392 length:251 (mRNA) (n/a) (n/a)
Evalue: 2e-62 | Bitscore: 198
Identities = 133/225 (59%), Positives = 150/225 (67%), Gaps = 8/225 (4%)
Self
Show Blast
tetur40g00392 length:251 (mRNA) (n/a) (n/a)
Evalue: 2e-62 | Bitscore: 198
Identities = 133/225 (59%), Positives = 150/225 (67%), Gaps = 8/225 (4%)
Self
Show Blast
tetur40g00392 length:251 (mRNA) (n/a) (n/a)
Evalue: 2e-62 | Bitscore: 198
Identities = 133/225 (59%), Positives = 150/225 (67%), Gaps = 8/225 (4%)
Self
Show Blast
XP_015793765.1 PREDICTED: uncharacterized protein LOC107370284 [Tetranychus urticae]
Evalue: 1e-58 | Bitscore: 198
Identities = 133/225 (59%), Positives = 150/225 (67%), Gaps = 8/225 (4%)
NCBI
Show Blast
tetur95g00080 length:161 (mRNA) (n/a) (scavenger receptor cysteine-rich protein)
Evalue: 5e-33 | Bitscore: 119
Identities = 81/210 (39%), Positives = 95/210 (45%), Gaps = 75/210 (36%)
Self
Show Blast
tetur95g00080 length:161 (mRNA) (n/a) (scavenger receptor cysteine-rich protein)
Evalue: 5e-33 | Bitscore: 119
Identities = 81/210 (39%), Positives = 95/210 (45%), Gaps = 75/210 (36%)
Self
Show Blast
tetur95g00060 length:250 (mRNA) (n/a) (PREDICTED: similar to ECM 18) (n/a) (PREDICTED: similar to ECM 18)
Evalue: 4e-30 | Bitscore: 114
Identities = 78/206 (38%), Positives = 92/206 (45%), Gaps = 75/206 (36%)
Self
Show Blast
tetur95g00060 length:120 (mRNA) (n/a) (PREDICTED: similar to ECM 18) (n/a) (PREDICTED: similar to ECM 18)
Evalue: 3e-20 | Bitscore: 84
Identities = 42/78 (54%), Positives = 52/78 (67%), Gaps = 3/78 (4%)
Self
Show Blast
tetur95g00060 length:120 (mRNA) (n/a) (PREDICTED: similar to ECM 18) (n/a) (PREDICTED: similar to ECM 18)
Evalue: 3e-20 | Bitscore: 84
Identities = 42/78 (54%), Positives = 52/78 (67%), Gaps = 3/78 (4%)
Self
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

CDS  

Locus ID
tetur22g00290
Redo Blast
CDS Length
756 nucleotides
CDS Sequence

Protein 

Locus ID
tetur22g00290
Redo Blast
Protein Length
252 aminoacids
Protein Sequence
Signal Peptide
na
Subcellular Localisation
na

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDCCZA16085.b1 Support ModelY More Info
EST IDCCZA16085.g1 Support ModelY More Info
CommentEST is mapped on the opposite strand of the predicted model
EST IDCCZA9630.b1 Support ModelY More Info
EST IDCCZA9630.g1 Support ModelY More Info
CommentEST is mapped on the opposite strand of the predicted model
EST IDCCZB1983.b1 Support ModelY More Info
EST IDCCZB1983.g1 Support ModelY More Info
CommentEST is mapped on the opposite strand of the predicted model
 
General Comments
n/a"20160216000000