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Tetranychus urticae


Gene ID
tetur20g02840
Locus
tetur20g02840
Functional Description
kekkon
Gene Type
protein-coding gene
Contig
scaffold_20
Last Modified On
19 February 2016 0h00
History

Annotator  

Name
Ryan Pace
Email
rmpace@email.arizona.edu
Lab
Nagy Lab
Status
active

Gene Actions  

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Gene Function 

Short Name
kekkon
Alternative Names
TETUR01g12760
Definition
kekkon
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Read Counts 

Gene Ontology 

Cellular Component
n/a
Molecular Function
1.
protein binding

Biological Process
n/a

Protein Domains 


Domain IDDescriptionDatabase
IPR007110 Immunoglobulin-like domain InterPro
G3DSA:3.80.10.10 n/a Gene3D
SSF52058 n/a SUPERFAMILY
TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. TMHMM
IPR001611 Leucine-rich repeat InterPro
IPR032675 Leucine-rich repeat domain, L domain-like InterPro
IPR013098 Immunoglobulin I-set InterPro
SignalP-TM n/a SignalP_GRAM_POSITIVE
CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. Phobius
NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region Phobius
IPR013783 Immunoglobulin-like fold InterPro
PTHR24366:SF11 n/a PANTHER
IPR003591 Leucine-rich repeat, typical subtype InterPro
PTHR24366 n/a PANTHER
TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. Phobius

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_015790050.1 PREDICTED: leucine-rich repeat-containing protein 24-like [Tetranychus urticae]
Evalue: 0.0 | Bitscore: 1113
Identities = 653/653 (100%), Positives = 653/653 (100%), Gaps = 0/653 (0%)
NCBI
Show Blast
tetur20g02860 length:654 (mRNA) (n/a) (Hypothetical protein)
Evalue: 0.0 | Bitscore: 1113
Identities = 653/653 (100%), Positives = 653/653 (100%), Gaps = 0/653 (0%)
Self
Show Blast
tetur20g02860 length:654 (mRNA) (n/a) (Hypothetical protein)
Evalue: 0.0 | Bitscore: 1113
Identities = 653/653 (100%), Positives = 653/653 (100%), Gaps = 0/653 (0%)
Self
Show Blast
XP_013792092.1 PREDICTED: leucine-rich repeat-containing protein 24-like [Limulus polyphemus]
Evalue: 8e-59 | Bitscore: 221
Identities = 132/362 (36%), Positives = 206/362 (57%), Gaps = 25/362 (7%)
NCBI
Show Blast
XP_013794003.1 PREDICTED: leucine-rich repeat-containing protein 24-like [Limulus polyphemus]
Evalue: 2e-56 | Bitscore: 214
Identities = 132/362 (36%), Positives = 201/362 (56%), Gaps = 25/362 (7%)
NCBI
Show Blast
XP_013774700.1 PREDICTED: leucine-rich repeat-containing protein 24-like [Limulus polyphemus]
Evalue: 5e-56 | Bitscore: 213
Identities = 135/356 (38%), Positives = 201/356 (56%), Gaps = 25/356 (7%)
NCBI
Show Blast
XP_013776704.1 PREDICTED: leucine-rich repeat-containing protein 4C-like [Limulus polyphemus]
Evalue: 2e-52 | Bitscore: 202
Identities = 123/362 (34%), Positives = 195/362 (54%), Gaps = 25/362 (7%)
NCBI
Show Blast
XP_015917898.1 PREDICTED: leucine-rich repeat-containing protein 24-like [Parasteatoda tepidariorum]
Evalue: 2e-51 | Bitscore: 200
Identities = 125/364 (34%), Positives = 193/364 (53%), Gaps = 29/364 (8%)
NCBI
Show Blast
KFM74116.1 Leucine-rich repeat and fibronectin type-III domain-containing protein 5, partial [Stegodyphus mimosarum]
Evalue: 2e-50 | Bitscore: 197
Identities = 126/364 (35%), Positives = 191/364 (52%), Gaps = 29/364 (8%)
NCBI
Show Blast
XP_973226.1 PREDICTED: similar to kek1 [Tribolium castaneum] 605
Evalue: 6e-53 | Bitscore: 195
Identities = 128/381 (34%), Positives = 200/381 (52%), Gaps = 29/381 (8%)
Insects
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

CDS  

Locus ID
tetur20g02840
Redo Blast
CDS Length
1962 nucleotides
CDS Sequence

Protein 

Locus ID
tetur20g02840
Redo Blast
Protein Length
654 aminoacids
Protein Sequence
Signal Peptide
na
Subcellular Localisation
na

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDJUNC00003550.bea Support ModelY More Info
EST IDJUNC00004033.lar Support ModelY More Info
EST IDJUNC00004034.lar Support ModelY More Info
EST IDJUNC00004035.lar Support ModelY More Info
EST IDJUNC00004036.lar Support ModelY More Info
EST IDJUNC00004037.lar Support ModelY More Info
EST IDJUNC00004038.lar Support ModelY More Info
EST IDJUNC00004039.lar Support ModelY More Info
EST IDJUNC00004040.lar Support ModelY More Info
EST IDJUNC00004041.lar Support ModelY More Info
EST IDJUNC00004042.lar Support ModelN More Info
CommentEST is not matching the given gene model.
EST IDJUNC00004089.nym Support ModelY More Info
EST IDJUNC00004090.nym Support ModelY More Info
EST IDJUNC00004091.nym Support ModelY More Info
EST IDJUNC00004092.nym Support ModelY More Info
EST IDJUNC00004093.nym Support ModelY More Info
EST IDJUNC00004094.nym Support ModelN More Info
CommentEST has one or more non canonical splice site(s)
EST IDJUNC00004095.nym Support ModelY More Info
EST IDJUNC00004096.nym Support ModelY More Info
EST IDJUNC00004410.emb Support ModelY More Info
EST IDJUNC00004411.emb Support ModelY More Info
EST IDJUNC00004412.emb Support ModelY More Info
EST IDJUNC00004413.emb Support ModelY More Info
EST IDJUNC00004414.emb Support ModelY More Info
EST IDJUNC00004415.emb Support ModelY More Info
EST IDJUNC00004416.emb Support ModelY More Info
EST IDJUNC00004417.emb Support ModelY More Info
EST IDJUNC00004418.emb Support ModelY More Info
EST IDJUNC00004419.emb Support ModelN More Info
CommentEST is not matching the given gene model.
EST IDJUNC00004704.ara Support ModelY More Info
EST IDJUNC00004705.ara Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00004706.ara Support ModelY More Info
EST IDJUNC00004707.ara Support ModelY More Info
EST IDJUNC00004708.ara Support ModelY More Info
EST IDJUNC00004709.ara Support ModelY More Info
EST IDJUNC00004710.ara Support ModelY More Info
EST IDJUNC00004711.ara Support ModelN More Info
CommentEST is not matching the given gene model.
EST IDJUNC00003550.bea Support ModelY More Info
EST IDJUNC00004033.lar Support ModelY More Info
EST IDJUNC00004034.lar Support ModelY More Info
EST IDJUNC00004035.lar Support ModelY More Info
EST IDJUNC00004036.lar Support ModelY More Info
EST IDJUNC00004037.lar Support ModelY More Info
EST IDJUNC00004038.lar Support ModelY More Info
EST IDJUNC00004039.lar Support ModelY More Info
EST IDJUNC00004040.lar Support ModelY More Info
EST IDJUNC00004041.lar Support ModelY More Info
EST IDJUNC00004042.lar Support ModelN More Info
CommentEST is not matching the given gene model.
EST IDJUNC00004089.nym Support ModelY More Info
EST IDJUNC00004090.nym Support ModelY More Info
EST IDJUNC00004091.nym Support ModelY More Info
EST IDJUNC00004092.nym Support ModelY More Info
EST IDJUNC00004093.nym Support ModelY More Info
EST IDJUNC00004094.nym Support ModelN More Info
CommentEST has one or more non canonical splice site(s)
EST IDJUNC00004095.nym Support ModelY More Info
EST IDJUNC00004096.nym Support ModelY More Info
EST IDJUNC00004410.emb Support ModelY More Info
EST IDJUNC00004411.emb Support ModelY More Info
EST IDJUNC00004412.emb Support ModelY More Info
EST IDJUNC00004413.emb Support ModelY More Info
EST IDJUNC00004414.emb Support ModelY More Info
EST IDJUNC00004415.emb Support ModelY More Info
EST IDJUNC00004416.emb Support ModelY More Info
EST IDJUNC00004417.emb Support ModelY More Info
EST IDJUNC00004418.emb Support ModelY More Info
EST IDJUNC00004419.emb Support ModelN More Info
CommentEST is not matching the given gene model.
EST IDJUNC00004704.ara Support ModelY More Info
EST IDJUNC00004705.ara Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00004706.ara Support ModelY More Info
EST IDJUNC00004707.ara Support ModelY More Info
EST IDJUNC00004708.ara Support ModelY More Info
EST IDJUNC00004709.ara Support ModelY More Info
EST IDJUNC00004710.ara Support ModelY More Info
EST IDJUNC00004711.ara Support ModelN More Info
CommentEST is not matching the given gene model.
 
General Comments
n/a"20160216000000