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Tetranychus urticae


Gene ID
tetur14g02640
Locus
tetur14g02640
Functional Description
Pleckstrin homology
Gene Type
protein-coding gene
Contig
scaffold_14
Last Modified On
19 February 2016 0h00
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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Gene Function 

Short Name
n/a
Alternative Names
TETUR05g11780
Definition
Pleckstrin homology
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Read Counts 

Gene Ontology 

Cellular Component
n/a
Molecular Function
1.
metal ion binding

Biological Process
1.
regulation of Rho protein signal transduction

 
Comment
Unknown GO IDs: GO:0005089

Protein Domains 


Domain IDDescriptionDatabase
SSF50729 n/a SUPERFAMILY
PTHR12673:SF135 n/a PANTHER
IPR000219 Dbl homology (DH) domain InterPro
PTHR12673 n/a PANTHER
IPR001849 Pleckstrin homology domain InterPro
IPR000306 FYVE zinc finger InterPro
IPR017455 Zinc finger, FYVE-related InterPro
IPR013083 Zinc finger, RING/FYVE/PHD-type InterPro
IPR011993 PH domain-like InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_008109059.1 PREDICTED: FYVE, RhoGEF and PH domain-containing protein 6 [Anolis carolinensis]
Evalue: 3e-140 | Bitscore: 464
Identities = 264/630 (42%), Positives = 377/630 (60%), Gaps = 60/630 (10%)
NCBI
Show Blast
Dappu0000016834 jgi|Dappu1|331275|NCBI_GNO_16100012
Evalue: 2e-139 | Bitscore: 453
Identities = 273/721 (38%), Positives = 414/721 (57%), Gaps = 66/721 (9%)
Insects
Show Blast
Dappu0000016834 jgi|Dappu1|331275|NCBI_GNO_16100012
Evalue: 2e-139 | Bitscore: 453
Identities = 273/721 (38%), Positives = 414/721 (57%), Gaps = 66/721 (9%)
Insects
Show Blast
Dappu0000016834 jgi|Dappu1|331275|NCBI_GNO_16100012
Evalue: 2e-139 | Bitscore: 453
Identities = 273/721 (38%), Positives = 414/721 (57%), Gaps = 66/721 (9%)
Insects
Show Blast
Dappu0000016834 jgi|Dappu1|331275|NCBI_GNO_16100012
Evalue: 2e-139 | Bitscore: 453
Identities = 273/721 (38%), Positives = 414/721 (57%), Gaps = 66/721 (9%)
Insects
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

CDS  

Locus ID
tetur14g02640
Redo Blast
CDS Length
2673 nucleotides
CDS Sequence

Protein 

Locus ID
tetur14g02640
Redo Blast
Protein Length
891 aminoacids
Protein Sequence
Signal Peptide
na
Subcellular Localisation
na

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDCCIO4475.b1 Support ModelN More Info
CommentEST is not matching the given gene model.
EST IDCCZA11778.b1 Support ModelY More Info
EST IDCCZA11778.g1 Support ModelY More Info
EST IDCCZA2717.b1 Support ModelY More Info
EST IDCCZA2717.g1 Support ModelY More Info
EST IDCCZB477.b1 Support ModelY More Info
EST IDCCZB477.g1 Support ModelY More Info
EST IDCCZB9518.b1 Support ModelY More Info
EST IDCCZB9518.g1 Support ModelY More Info
EST IDJUNC00007252.adu Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00007253.adu Support ModelY More Info
EST IDJUNC00007254.adu Support ModelY More Info
EST IDJUNC00007255.adu Support ModelY More Info
EST IDJUNC00008820.bea Support ModelY More Info
EST IDJUNC00008821.bea Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00008822.bea Support ModelY More Info
EST IDJUNC00008823.bea Support ModelY More Info
EST IDJUNC00008824.bea Support ModelY More Info
EST IDJUNC00009798.lar Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00009799.lar Support ModelY More Info
EST IDJUNC00009800.lar Support ModelY More Info
EST IDJUNC00009801.lar Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00009802.lar Support ModelY More Info
EST IDJUNC00009803.lar Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00009804.lar Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00009805.lar Support ModelY More Info
EST IDJUNC00010049.nym Support ModelY More Info
EST IDJUNC00010050.nym Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00010051.nym Support ModelY More Info
EST IDJUNC00010052.nym Support ModelY More Info
EST IDJUNC00010053.nym Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00010054.nym Support ModelY More Info
EST IDJUNC00010678.emb Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00010679.emb Support ModelY More Info
EST IDJUNC00010680.emb Support ModelY More Info
EST IDJUNC00010681.emb Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00010682.emb Support ModelY More Info
EST IDJUNC00010683.emb Support ModelY More Info
EST IDJUNC00011583.ara Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00011584.ara Support ModelY More Info
EST IDJUNC00011585.ara Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00011586.ara Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00011587.ara Support ModelY More Info
EST IDJUNC00011588.ara Support ModelY More Info
EST IDJUNC00011589.ara Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00011590.ara Support ModelY More Info
EST IDCCIO4475.b1 Support ModelN More Info
CommentEST is not matching the given gene model.
EST IDCCZA11778.b1 Support ModelY More Info
EST IDCCZA11778.g1 Support ModelY More Info
EST IDCCZA2717.b1 Support ModelY More Info
EST IDCCZA2717.g1 Support ModelY More Info
EST IDCCZB477.b1 Support ModelY More Info
EST IDCCZB477.g1 Support ModelY More Info
EST IDCCZB9518.b1 Support ModelY More Info
EST IDCCZB9518.g1 Support ModelY More Info
EST IDJUNC00007252.adu Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00007253.adu Support ModelY More Info
EST IDJUNC00007254.adu Support ModelY More Info
EST IDJUNC00007255.adu Support ModelY More Info
EST IDJUNC00008820.bea Support ModelY More Info
EST IDJUNC00008821.bea Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00008822.bea Support ModelY More Info
EST IDJUNC00008823.bea Support ModelY More Info
EST IDJUNC00008824.bea Support ModelY More Info
EST IDJUNC00009798.lar Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00009799.lar Support ModelY More Info
EST IDJUNC00009800.lar Support ModelY More Info
EST IDJUNC00009801.lar Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00009802.lar Support ModelY More Info
EST IDJUNC00009803.lar Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00009804.lar Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00009805.lar Support ModelY More Info
EST IDJUNC00010049.nym Support ModelY More Info
EST IDJUNC00010050.nym Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00010051.nym Support ModelY More Info
EST IDJUNC00010052.nym Support ModelY More Info
EST IDJUNC00010053.nym Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00010054.nym Support ModelY More Info
EST IDJUNC00010678.emb Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00010679.emb Support ModelY More Info
EST IDJUNC00010680.emb Support ModelY More Info
EST IDJUNC00010681.emb Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00010682.emb Support ModelY More Info
EST IDJUNC00010683.emb Support ModelY More Info
EST IDJUNC00011583.ara Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00011584.ara Support ModelY More Info
EST IDJUNC00011585.ara Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00011586.ara Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00011587.ara Support ModelY More Info
EST IDJUNC00011588.ara Support ModelY More Info
EST IDJUNC00011589.ara Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00011590.ara Support ModelY More Info
 
General Comments
n/a"20160216000000