- Gene ID
- tetur08g01870
- Locus
- tetur08g01870
- Functional Description
- PREDICTED: similar to mosaic protein LR11
- Gene Type
- protein-coding gene
- Contig
- scaffold_8
- Last Modified On
- 19 February 2016 0h00
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- TETUR03g21290
- Definition
- PREDICTED: similar to mosaic protein LR11
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Read Counts
Gene Ontology
- n/a
-
Protein Domains
- n/a
-
Protein Homologs
ProteinID | Description / BlastScore | Database | Actions |
XP_015785250.1 |
PREDICTED: low-density lipoprotein receptor-related protein 5-like [Tetranychus urticae]
Evalue: 2e-12 | Bitscore: 69 Identities = 32/32 (100%), Positives = 32/32 (100%), Gaps = 0/32 (0%) |
NCBI |
Show Blast
|
No hits found against database Insects with an e-value better than 1e-3. |
No hits found against database Ixodes with an e-value better than 1e-3. |
ProteinID | Description / BlastScore | Database | Actions |
XP_015785250.1 |
PREDICTED: low-density lipoprotein receptor-related protein 5-like [Tetranychus urticae]
Evalue: 2e-12 | Bitscore: 69 Identities = 32/32 (100%), Positives = 32/32 (100%), Gaps = 0/32 (0%) |
NCBI |
Show Blast
|
No hits found against database Self with an e-value better than 1e-3. |
No hits found against database SwissP with an e-value better than 1e-3. |
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- -
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
View in GenomeView| View in Artemini
EST ID | CCZA3394.b1 |
Support Model | Y |
More Info |
Mapping Location | 832059..832334,832783..833237 |
Strand - |
EST ID | CCZA3394.g1 |
Support Model | Y |
More Info |
Mapping Location | 831783..832334,832783..832945 |
Strand - |
EST ID | JUNC00032246.lar |
Support Model | N |
More Info |
Comment | EST is not matching the given gene model. EST is mapped on the opposite strand |
Mapping Location | 830738..830754,833705..833765 |
Strand + |
EST ID | JUNC00032247.lar |
Support Model | Y |
More Info |
Mapping Location | 832312..832334,832783..832834 |
Strand - |
EST ID | JUNC00033109.nym |
Support Model | N |
More Info |
Comment | EST is not matching the given gene model. EST is mapped on the opposite strand |
Mapping Location | 830692..830754,833705..833764 |
Strand + |
EST ID | JUNC00033110.nym |
Support Model | N |
More Info |
Comment | EST has one or more non canonical splice site(s) EST is mapped on the opposite strand of the predicted model |
Mapping Location | 832312..832330,832779..832834 |
Strand + |
EST ID | JUNC00033111.nym |
Support Model | Y |
More Info |
Mapping Location | 832282..832334,832783..832804 |
Strand - |
EST ID | JUNC00034982.emb |
Support Model | N |
More Info |
Comment | EST is not matching the given gene model. EST is mapped on the opposite strand |
Mapping Location | 830717..830754,833705..833764 |
Strand + |
EST ID | JUNC00038479.ara |
Support Model | N |
More Info |
Comment | EST is not matching the given gene model. EST is mapped on the opposite strand |
Mapping Location | 830688..830754,833705..833741 |
Strand + |
EST ID | JUNC00038481.ara |
Support Model | N |
More Info |
Comment | EST has one or more non canonical splice site(s) EST is mapped on the opposite strand of the predicted model |
Mapping Location | 832312..832330,832779..832834 |
Strand + |
EST ID | JUNC00038482.ara |
Support Model | Y |
More Info |
Mapping Location | 832312..832334,832783..832834 |
Strand - |
EST ID | CCZA3394.b1 |
Support Model | Y |
More Info |
Mapping Location | 832059..832334,832783..833237 |
Strand - |
EST ID | CCZA3394.g1 |
Support Model | Y |
More Info |
Mapping Location | 831783..832334,832783..832945 |
Strand - |
EST ID | JUNC00032246.lar |
Support Model | N |
More Info |
Comment | EST is not matching the given gene model. EST is mapped on the opposite strand |
Mapping Location | 830738..830754,833705..833765 |
Strand + |
EST ID | JUNC00032247.lar |
Support Model | Y |
More Info |
Mapping Location | 832312..832334,832783..832834 |
Strand - |
EST ID | JUNC00033109.nym |
Support Model | N |
More Info |
Comment | EST is not matching the given gene model. EST is mapped on the opposite strand |
Mapping Location | 830692..830754,833705..833764 |
Strand + |
EST ID | JUNC00033110.nym |
Support Model | N |
More Info |
Comment | EST has one or more non canonical splice site(s) EST is mapped on the opposite strand of the predicted model |
Mapping Location | 832312..832330,832779..832834 |
Strand + |
EST ID | JUNC00033111.nym |
Support Model | Y |
More Info |
Mapping Location | 832282..832334,832783..832804 |
Strand - |
EST ID | JUNC00034982.emb |
Support Model | N |
More Info |
Comment | EST is not matching the given gene model. EST is mapped on the opposite strand |
Mapping Location | 830717..830754,833705..833764 |
Strand + |
EST ID | JUNC00038479.ara |
Support Model | N |
More Info |
Comment | EST is not matching the given gene model. EST is mapped on the opposite strand |
Mapping Location | 830688..830754,833705..833741 |
Strand + |
EST ID | JUNC00038481.ara |
Support Model | N |
More Info |
Comment | EST has one or more non canonical splice site(s) EST is mapped on the opposite strand of the predicted model |
Mapping Location | 832312..832330,832779..832834 |
Strand + |
EST ID | JUNC00038482.ara |
Support Model | Y |
More Info |
Mapping Location | 832312..832334,832783..832834 |
Strand - |
EST ID | JUNC00024081.adu |
Support Model | Y |
More Info |
Mapping Location | 833177..833243,833296..833316 |
Strand - |
EST ID | JUNC00032248.lar |
Support Model | Y |
More Info |
Mapping Location | 833177..833243,833296..833335 |
Strand - |
EST ID | JUNC00033112.nym |
Support Model | Y |
More Info |
Mapping Location | 833177..833243,833296..833363 |
Strand - |
EST ID | JUNC00038483.ara |
Support Model | Y |
More Info |
Mapping Location | 833188..833243,833296..833345 |
Strand - |
- General Comments
- n/a"20160216000000
|