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Tetranychus urticae


Gene ID
tetur07g01530
Locus
tetur07g01530
Functional Description
Histone H3
Gene Type
protein-coding gene
Contig
scaffold_7
Last Modified On
19 February 2016 0h00
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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Gene Function 

Short Name
His3b
Alternative Names
TETUR03g44990
Definition
Histone H3
Additional Functional Description
Core component of nucleosome. The nucleosome is a histone octamer containing two molecules each of H2A; H2B; H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA. Phosphorylation at Ser-11 by ial/aurora-B during mitosis and meiosis is crucial for chromosome condensation and cell-cycle progression. Acetylated on Lys-15 during prophase I of meiosis. Methylation at Lys-5 or Lys-80 is generally associated with active chromatin.
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Read Counts 

Gene Ontology 

Cellular Component
1.
nucleosome

Molecular Function
1.
DNA binding

2.
protein heterodimerization activity

Biological Process
n/a

Protein Domains 


Domain IDDescriptionDatabase
IPR000164 Histone H3/CENP-A InterPro
IPR009072 Histone-fold InterPro
IPR007125 Histone H2A/H2B/H3 InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
KOC68258.1 Histone H3, partial [Habropoda laboriosa]
Evalue: 6e-92 | Bitscore: 275
Identities = 136/136 (100%), Positives = 136/136 (100%), Gaps = 0/136 (0%)
NCBI
Show Blast
tetur05g07300 length:137 (mRNA) (H3a) (Histone H3)
Evalue: 2e-95 | Bitscore: 274
Identities = 136/136 (100%), Positives = 136/136 (100%), Gaps = 0/136 (0%)
Self
Show Blast
tetur05g07250 length:137 (mRNA) (H3c) (Histone H3)
Evalue: 2e-95 | Bitscore: 274
Identities = 136/136 (100%), Positives = 136/136 (100%), Gaps = 0/136 (0%)
Self
Show Blast
tetur05g07300 length:137 (mRNA) (H3a) (Histone H3)
Evalue: 2e-95 | Bitscore: 274
Identities = 136/136 (100%), Positives = 136/136 (100%), Gaps = 0/136 (0%)
Self
Show Blast
tetur05g07250 length:137 (mRNA) (H3c) (Histone H3)
Evalue: 2e-95 | Bitscore: 274
Identities = 136/136 (100%), Positives = 136/136 (100%), Gaps = 0/136 (0%)
Self
Show Blast
tetur05g07300 length:137 (mRNA) (H3a) (Histone H3)
Evalue: 2e-95 | Bitscore: 274
Identities = 136/136 (100%), Positives = 136/136 (100%), Gaps = 0/136 (0%)
Self
Show Blast
tetur05g07250 length:137 (mRNA) (H3c) (Histone H3)
Evalue: 2e-95 | Bitscore: 274
Identities = 136/136 (100%), Positives = 136/136 (100%), Gaps = 0/136 (0%)
Self
Show Blast
tetur05g07300 length:137 (mRNA) (H3a) (Histone H3)
Evalue: 2e-95 | Bitscore: 274
Identities = 136/136 (100%), Positives = 136/136 (100%), Gaps = 0/136 (0%)
Self
Show Blast
tetur05g07250 length:137 (mRNA) (H3c) (Histone H3)
Evalue: 2e-95 | Bitscore: 274
Identities = 136/136 (100%), Positives = 136/136 (100%), Gaps = 0/136 (0%)
Self
Show Blast
29597 AAEL000482-RA.1
Evalue: 1e-94 | Bitscore: 274
Identities = 136/136 (100%), Positives = 136/136 (100%), Gaps = 0/136 (0%)
Insects
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
3

CDS  

Locus ID
tetur07g01530
Redo Blast
CDS Length
411 nucleotides
CDS Sequence

Protein 

Locus ID
tetur07g01530
Redo Blast
Protein Length
137 aminoacids
Protein Sequence
Signal Peptide
na
Subcellular Localisation
na

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDCCIN1986.b1 Support ModelY More Info
EST IDCCIN1986.g1 Support ModelY More Info
CommentEST is mapped on the opposite strand of the predicted model
EST IDCCIN2182.b1 Support ModelY More Info
EST IDCCIN2182.g1 Support ModelY More Info
CommentEST is mapped on the opposite strand of the predicted model
EST IDCCIN2449.b1 Support ModelY More Info
EST IDCCIN2449.g1 Support ModelY More Info
CommentEST is mapped on the opposite strand of the predicted model
EST IDCCIN3006.b1 Support ModelY More Info
EST IDCCIN3251.b1 Support ModelY More Info
EST IDCCIN3251.g1 Support ModelY More Info
CommentEST is mapped on the opposite strand of the predicted model
EST IDCCIN447.g1 Support ModelY More Info
CommentEST is mapped on the opposite strand of the predicted model
EST IDCCIN5903.b1 Support ModelY More Info
EST IDCCIN5903.g1 Support ModelY More Info
CommentEST is mapped on the opposite strand of the predicted model
EST IDCCIN6075.b1 Support ModelY More Info
EST IDCCIN6688.b1 Support ModelY More Info
EST IDCCIN6688.g1 Support ModelY More Info
CommentEST is mapped on the opposite strand of the predicted model
EST IDCCIN6763.b1 Support ModelY More Info
EST IDCCIN6763.g1 Support ModelY More Info
CommentEST is mapped on the opposite strand of the predicted model
EST IDCCIN990.b1 Support ModelY More Info
EST IDCCIN990.g1 Support ModelY More Info
CommentEST is mapped on the opposite strand of the predicted model
EST IDCCZA2878.b1 Support ModelY More Info
EST IDCCZA2878.g1 Support ModelY More Info
CommentEST is mapped on the opposite strand of the predicted model
EST IDCCZA8632.b1 Support ModelY More Info
EST IDCCZA8632.g1 Support ModelY More Info
CommentEST is mapped on the opposite strand of the predicted model
EST IDCCZB14329.b1 Support ModelY More Info
EST IDEXTA7716.b0 Support ModelY More Info
EST IDJUNC00019299.lar Support ModelN More Info
CommentEST is not matching the given gene model.
EST IDTetur07g01930 Support ModelY More Info
EST IDCCIN1986.b1 Support ModelY More Info
EST IDCCIN1986.g1 Support ModelY More Info
CommentEST is mapped on the opposite strand of the predicted model
EST IDCCIN2182.b1 Support ModelY More Info
EST IDCCIN2182.g1 Support ModelY More Info
CommentEST is mapped on the opposite strand of the predicted model
EST IDCCIN2449.b1 Support ModelY More Info
EST IDCCIN2449.g1 Support ModelY More Info
CommentEST is mapped on the opposite strand of the predicted model
EST IDCCIN3006.b1 Support ModelY More Info
EST IDCCIN3251.b1 Support ModelY More Info
EST IDCCIN3251.g1 Support ModelY More Info
CommentEST is mapped on the opposite strand of the predicted model
EST IDCCIN447.g1 Support ModelY More Info
CommentEST is mapped on the opposite strand of the predicted model
EST IDCCIN5903.b1 Support ModelY More Info
EST IDCCIN5903.g1 Support ModelY More Info
CommentEST is mapped on the opposite strand of the predicted model
EST IDCCIN6075.b1 Support ModelY More Info
EST IDCCIN6688.b1 Support ModelY More Info
EST IDCCIN6688.g1 Support ModelY More Info
CommentEST is mapped on the opposite strand of the predicted model
EST IDCCIN6763.b1 Support ModelY More Info
EST IDCCIN6763.g1 Support ModelY More Info
CommentEST is mapped on the opposite strand of the predicted model
EST IDCCIN990.b1 Support ModelY More Info
EST IDCCIN990.g1 Support ModelY More Info
CommentEST is mapped on the opposite strand of the predicted model
EST IDCCZA2878.b1 Support ModelY More Info
EST IDCCZA2878.g1 Support ModelY More Info
CommentEST is mapped on the opposite strand of the predicted model
EST IDCCZA8632.b1 Support ModelY More Info
EST IDCCZA8632.g1 Support ModelY More Info
CommentEST is mapped on the opposite strand of the predicted model
EST IDCCZB14329.b1 Support ModelY More Info
EST IDEXTA7716.b0 Support ModelY More Info
EST IDJUNC00019299.lar Support ModelN More Info
CommentEST is not matching the given gene model.
EST IDTetur07g01930 Support ModelY More Info
 
General Comments
n/a"20160216000000