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Tetranychus urticae


Gene ID
tetur03g09900
Locus
tetur03g09900
Functional Description
PREDICTED: similar to ECM 18
Gene Type
protein-coding gene
Contig
scaffold_3
Last Modified On
19 February 2016 0h00
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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Gene Function 

Short Name
n/a
Alternative Names
TETUR03g08090
Definition
PREDICTED: similar to ECM 18
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Read Counts 

Gene Ontology 

n/a
 

Protein Domains 


Domain IDDescriptionDatabase
G3DSA:2.10.25.10 n/a Gene3D
PTHR23259 n/a PANTHER
IPR002919 Trypsin Inhibitor-like, cysteine rich domain InterPro
PTHR23259:SF34 n/a PANTHER

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
tetur40g00200 length:336 (mRNA) (n/a) (PREDICTED: similar to ECM 18)
Evalue: 3e-50 | Bitscore: 170
Identities = 113/245 (46%), Positives = 139/245 (57%), Gaps = 62/245 (25%)
Self
Show Blast
tetur40g00200 length:336 (mRNA) (n/a) (PREDICTED: similar to ECM 18)
Evalue: 3e-50 | Bitscore: 170
Identities = 113/245 (46%), Positives = 139/245 (57%), Gaps = 62/245 (25%)
Self
Show Blast
XP_015793763.1 PREDICTED: von Willebrand factor-like [Tetranychus urticae]
Evalue: 2e-46 | Bitscore: 170
Identities = 113/245 (46%), Positives = 139/245 (57%), Gaps = 62/245 (25%)
NCBI
Show Blast
tetur95g00090 length:248 (mRNA) (n/a) (PREDICTED: similar to ECM 18)
Evalue: 4e-38 | Bitscore: 136
Identities = 85/142 (60%), Positives = 94/142 (66%), Gaps = 3/142 (2%)
Self
Show Blast
tetur95g00090 length:248 (mRNA) (n/a) (PREDICTED: similar to ECM 18)
Evalue: 4e-38 | Bitscore: 136
Identities = 85/142 (60%), Positives = 94/142 (66%), Gaps = 3/142 (2%)
Self
Show Blast
XP_015794061.1 PREDICTED: P17/29C-like protein DDB_G0287399 [Tetranychus urticae]
Evalue: 2e-34 | Bitscore: 136
Identities = 85/142 (60%), Positives = 94/142 (66%), Gaps = 3/142 (2%)
NCBI
Show Blast
tetur40g00391 length:260 (mRNA) (n/a) (n/a)
Evalue: 5e-33 | Bitscore: 122
Identities = 79/142 (56%), Positives = 90/142 (63%), Gaps = 13/142 (9%)
Self
Show Blast
tetur40g00391 length:260 (mRNA) (n/a) (n/a)
Evalue: 5e-33 | Bitscore: 122
Identities = 79/142 (56%), Positives = 90/142 (63%), Gaps = 13/142 (9%)
Self
Show Blast
tetur40g00391 length:260 (mRNA) (n/a) (n/a)
Evalue: 5e-33 | Bitscore: 122
Identities = 79/142 (56%), Positives = 90/142 (63%), Gaps = 13/142 (9%)
Self
Show Blast
tetur40g00391 length:260 (mRNA) (n/a) (n/a)
Evalue: 5e-33 | Bitscore: 122
Identities = 79/142 (56%), Positives = 90/142 (63%), Gaps = 13/142 (9%)
Self
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

CDS  

Locus ID
tetur03g09900
Redo Blast
CDS Length
834 nucleotides
CDS Sequence

Protein 

Locus ID
tetur03g09900
Redo Blast
Protein Length
278 aminoacids
Protein Sequence
Signal Peptide
na
Subcellular Localisation
na

Associated ESTs/cDNAs 

n/a
 
 
General Comments
n/a"20160216000000