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Tetranychus urticae


Gene ID
tetur03g01730
Locus
tetur03g01730
Functional Description
Histone H4
Gene Type
protein-coding gene
Contig
scaffold_3
Last Modified On
19 February 2016 0h00
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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Gene Function 

Short Name
n/a
Alternative Names
TETUR03g14770
Definition
Histone H4
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Read Counts 

Gene Ontology 

Cellular Component
1.
nucleosome

2.
nucleus

Molecular Function
1.
DNA binding

2.
protein heterodimerization activity

Biological Process
1.
nucleosome assembly

2.
DNA-templated transcription, initiation

Protein Domains 


Domain IDDescriptionDatabase
PTHR10484 n/a PANTHER
PF15511 Centromere kinetochore component CENP-T histone fold Pfam
IPR009072 Histone-fold InterPro
IPR019809 Histone H4, conserved site InterPro
IPR001951 Histone H4 InterPro
IPR004823 TATA box binding protein associated factor (TAF) InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_002045951.1 GM19606 [Drosophila sechellia]
Evalue: 2e-49 | Bitscore: 164
Identities = 82/82 (100%), Positives = 82/82 (100%), Gaps = 0/82 (0%)
NCBI
Show Blast
tetur03g01690 length:104 (mRNA) (n/a) (Histone H4)
Evalue: 9e-53 | Bitscore: 163
Identities = 82/82 (100%), Positives = 82/82 (100%), Gaps = 0/82 (0%)
Self
Show Blast
tetur02g04230 length:104 (mRNA) (n/a) (Histone H4)
Evalue: 9e-53 | Bitscore: 163
Identities = 82/82 (100%), Positives = 82/82 (100%), Gaps = 0/82 (0%)
Self
Show Blast
tetur03g01690 length:104 (mRNA) (n/a) (Histone H4)
Evalue: 9e-53 | Bitscore: 163
Identities = 82/82 (100%), Positives = 82/82 (100%), Gaps = 0/82 (0%)
Self
Show Blast
tetur02g04230 length:104 (mRNA) (n/a) (Histone H4)
Evalue: 9e-53 | Bitscore: 163
Identities = 82/82 (100%), Positives = 82/82 (100%), Gaps = 0/82 (0%)
Self
Show Blast
tetur03g01690 length:104 (mRNA) (n/a) (Histone H4)
Evalue: 9e-53 | Bitscore: 163
Identities = 82/82 (100%), Positives = 82/82 (100%), Gaps = 0/82 (0%)
Self
Show Blast
tetur02g04230 length:104 (mRNA) (n/a) (Histone H4)
Evalue: 9e-53 | Bitscore: 163
Identities = 82/82 (100%), Positives = 82/82 (100%), Gaps = 0/82 (0%)
Self
Show Blast
tetur03g01690 length:104 (mRNA) (n/a) (Histone H4)
Evalue: 9e-53 | Bitscore: 163
Identities = 82/82 (100%), Positives = 82/82 (100%), Gaps = 0/82 (0%)
Self
Show Blast
tetur02g04230 length:104 (mRNA) (n/a) (Histone H4)
Evalue: 9e-53 | Bitscore: 163
Identities = 82/82 (100%), Positives = 82/82 (100%), Gaps = 0/82 (0%)
Self
Show Blast
28646 AAEL003863-RA.1
Evalue: 6e-52 | Bitscore: 163
Identities = 82/82 (100%), Positives = 82/82 (100%), Gaps = 0/82 (0%)
Insects
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

CDS  

Locus ID
tetur03g01730
Redo Blast
CDS Length
312 nucleotides
CDS Sequence

Protein 

Locus ID
tetur03g01730
Redo Blast
Protein Length
104 aminoacids
Protein Sequence
Signal Peptide
na
Subcellular Localisation
na

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDCCIN1078.b1 Support ModelY More Info
EST IDCCIN1078.g1 Support ModelY More Info
CommentEST is mapped on the opposite strand of the predicted model
EST IDCCIN1561.b1 Support ModelY More Info
EST IDCCIN1561.g1 Support ModelY More Info
CommentEST is mapped on the opposite strand of the predicted model
EST IDCCIN4130.b1 Support ModelY More Info
EST IDCCIN4130.g1 Support ModelY More Info
CommentEST is mapped on the opposite strand of the predicted model
EST IDCCIN1078.b1 Support ModelY More Info
EST IDCCIN1078.g1 Support ModelY More Info
CommentEST is mapped on the opposite strand of the predicted model
EST IDCCIN1561.b1 Support ModelY More Info
EST IDCCIN1561.g1 Support ModelY More Info
CommentEST is mapped on the opposite strand of the predicted model
EST IDCCIN4130.b1 Support ModelY More Info
EST IDCCIN4130.g1 Support ModelY More Info
CommentEST is mapped on the opposite strand of the predicted model
 
General Comments
n/a"20160216000000