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Tetranychus urticae


Gene ID
tetur02g10090
Locus
tetur02g10090
Functional Description
P-loop containing nucleoside triphosphate hydrolase
Gene Type
protein-coding gene
Contig
scaffold_2
Last Modified On
19 February 2016 0h00
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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Gene Function 

Short Name
n/a
Alternative Names
TETUR01g09520
Definition
P-loop containing nucleoside triphosphate hydrolase
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Read Counts 

Gene Ontology 

Cellular Component
n/a
Molecular Function
1.
calcium ion binding

2.
protein binding

3.
GTP binding

Biological Process
n/a

Protein Domains 


Domain IDDescriptionDatabase
IPR030381 Dynamin-type guanine nucleotide-binding (G) domain InterPro
IPR018247 EF-Hand 1, calcium-binding site InterPro
IPR027417 P-loop containing nucleoside triphosphate hydrolase InterPro
IPR002048 EF-hand domain InterPro
IPR011992 EF-hand domain pair InterPro
SSF47473 n/a SUPERFAMILY
IPR031692 EH domain-containing protein, N-terminal InterPro
IPR022812 Dynamin superfamily InterPro
PTHR11216:SF31 n/a PANTHER
IPR000261 EH domain InterPro
PTHR11216 n/a PANTHER
PF12763 Cytoskeletal-regulatory complex EF hand Pfam
PF00350 Dynamin family Pfam

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_015795220.1 PREDICTED: EH domain-containing protein 3-like isoform X1 [Tetranychus urticae]
Evalue: 0.0 | Bitscore: 1133
Identities = 552/552 (100%), Positives = 552/552 (100%), Gaps = 0/552 (0%)
NCBI
Show Blast
XP_015795225.1 PREDICTED: EH domain-containing protein 3-like isoform X2 [Tetranychus urticae]
Evalue: 0.0 | Bitscore: 1089
Identities = 532/532 (100%), Positives = 532/532 (100%), Gaps = 0/532 (0%)
NCBI
Show Blast
XP_015926205.1 PREDICTED: EH domain-containing protein 1-like [Parasteatoda tepidariorum]
Evalue: 0.0 | Bitscore: 843
Identities = 401/533 (75%), Positives = 462/533 (87%), Gaps = 2/533 (0%)
NCBI
Show Blast
XP_013776303.1 PREDICTED: EH domain-containing protein 3-like [Limulus polyphemus]
Evalue: 0.0 | Bitscore: 828
Identities = 396/533 (74%), Positives = 462/533 (87%), Gaps = 2/533 (0%)
NCBI
Show Blast
XP_003744278.1 PREDICTED: EH domain-containing protein 1-like [Metaseiulus occidentalis]
Evalue: 0.0 | Bitscore: 824
Identities = 396/532 (74%), Positives = 457/532 (86%), Gaps = 2/532 (0%)
NCBI
Show Blast
XP_013773832.1 PREDICTED: EH domain-containing protein 3-like [Limulus polyphemus]
Evalue: 0.0 | Bitscore: 823
Identities = 393/534 (74%), Positives = 458/534 (86%), Gaps = 2/534 (0%)
NCBI
Show Blast
Dappu0000016641 jgi|Dappu1|304007|PASA_GEN_2500025
Evalue: 0.0 | Bitscore: 821
Identities = 394/539 (73%), Positives = 458/539 (85%), Gaps = 7/539 (1%)
Insects
Show Blast
Dappu0000016641 jgi|Dappu1|304007|PASA_GEN_2500025
Evalue: 0.0 | Bitscore: 821
Identities = 394/539 (73%), Positives = 458/539 (85%), Gaps = 7/539 (1%)
Insects
Show Blast
Dappu0000016641 jgi|Dappu1|304007|PASA_GEN_2500025
Evalue: 0.0 | Bitscore: 821
Identities = 394/539 (73%), Positives = 458/539 (85%), Gaps = 7/539 (1%)
Insects
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

CDS  

Locus ID
tetur02g10090
Redo Blast
CDS Length
1659 nucleotides
CDS Sequence

Protein 

Locus ID
tetur02g10090
Redo Blast
Protein Length
553 aminoacids
Protein Sequence
Signal Peptide
na
Subcellular Localisation
na

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDCCZA10330.b1 Support ModelY More Info
EST IDCCZA10330.g1 Support ModelY More Info
EST IDJUNC00019595.adu Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00019596.adu Support ModelY More Info
EST IDJUNC00019597.adu Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00019598.adu Support ModelY More Info
EST IDJUNC00019599.adu Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00019600.adu Support ModelY More Info
EST IDJUNC00023765.bea Support ModelY More Info
EST IDJUNC00023766.bea Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00023767.bea Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00023768.bea Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00023769.bea Support ModelY More Info
EST IDJUNC00023770.bea Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00023771.bea Support ModelY More Info
EST IDJUNC00026446.lar Support ModelY More Info
EST IDJUNC00026447.lar Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00026448.lar Support ModelY More Info
EST IDJUNC00026449.lar Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00026450.lar Support ModelY More Info
EST IDJUNC00027114.nym Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00027115.nym Support ModelY More Info
EST IDJUNC00027116.nym Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00027117.nym Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00027118.nym Support ModelY More Info
EST IDJUNC00027119.nym Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00027120.nym Support ModelY More Info
EST IDJUNC00027121.nym Support ModelN More Info
CommentEST is not matching the given gene model.
EST IDJUNC00028650.emb Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00028651.emb Support ModelY More Info
EST IDJUNC00028652.emb Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00028653.emb Support ModelY More Info
EST IDJUNC00028654.emb Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00028655.emb Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00028656.emb Support ModelY More Info
EST IDJUNC00028657.emb Support ModelN More Info
CommentEST is not matching the given gene model.
EST IDJUNC00031445.ara Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00031446.ara Support ModelY More Info
EST IDJUNC00031447.ara Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00031448.ara Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00031449.ara Support ModelY More Info
EST IDJUNC00031450.ara Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00031451.ara Support ModelY More Info
EST IDCCZA10330.b1 Support ModelY More Info
EST IDCCZA10330.g1 Support ModelY More Info
EST IDJUNC00019595.adu Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00019596.adu Support ModelY More Info
EST IDJUNC00019597.adu Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00019598.adu Support ModelY More Info
EST IDJUNC00019599.adu Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00019600.adu Support ModelY More Info
EST IDJUNC00023765.bea Support ModelY More Info
EST IDJUNC00023766.bea Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00023767.bea Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00023768.bea Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00023769.bea Support ModelY More Info
EST IDJUNC00023770.bea Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00023771.bea Support ModelY More Info
EST IDJUNC00026446.lar Support ModelY More Info
EST IDJUNC00026447.lar Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00026448.lar Support ModelY More Info
EST IDJUNC00026449.lar Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00026450.lar Support ModelY More Info
EST IDJUNC00027114.nym Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00027115.nym Support ModelY More Info
EST IDJUNC00027116.nym Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00027117.nym Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00027118.nym Support ModelY More Info
EST IDJUNC00027119.nym Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00027120.nym Support ModelY More Info
EST IDJUNC00027121.nym Support ModelN More Info
CommentEST is not matching the given gene model.
EST IDJUNC00028650.emb Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00028651.emb Support ModelY More Info
EST IDJUNC00028652.emb Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00028653.emb Support ModelY More Info
EST IDJUNC00028654.emb Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00028655.emb Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00028656.emb Support ModelY More Info
EST IDJUNC00028657.emb Support ModelN More Info
CommentEST is not matching the given gene model.
EST IDJUNC00031445.ara Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00031446.ara Support ModelY More Info
EST IDJUNC00031447.ara Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00031448.ara Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00031449.ara Support ModelY More Info
EST IDJUNC00031450.ara Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00031451.ara Support ModelY More Info
 
General Comments
n/a"20160216000000