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Tetranychus urticae


Gene ID
tetur02g03950
Locus
tetur02g03950
Functional Description
lipophorin receptor
Gene Type
protein-coding gene
Contig
scaffold_2
Last Modified On
19 February 2016 0h00
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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Gene Function 

Short Name
n/a
Alternative Names
TETUR04g34200
Definition
lipophorin receptor
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Read Counts 

Gene Ontology 

Cellular Component
n/a
Molecular Function
1.
protein binding

Biological Process
n/a

Protein Domains 


Domain IDDescriptionDatabase
PTHR10529:SF258 n/a PANTHER
IPR002172 Low-density lipoprotein (LDL) receptor class A repeat InterPro
SIGNAL_PEPTIDE Signal peptide region Phobius
PTHR10529 n/a PANTHER
IPR023415 Low-density lipoprotein (LDL) receptor class A, conserved site InterPro
SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. Phobius
SignalP-TM n/a SignalP_GRAM_NEGATIVE
SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. Phobius
NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region Phobius
SignalP-noTM n/a SignalP_EUK
SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. Phobius

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_002430267.1 low-density lipoprotein receptor, putative [Pediculus humanus corporis]
Evalue: 3e-12 | Bitscore: 73
Identities = 35/75 (47%), Positives = 49/75 (65%), Gaps = 4/75 (5%)
NCBI
Show Blast
BAC02725.2 vitellogenin receptor [Periplaneta americana]
Evalue: 7e-12 | Bitscore: 72
Identities = 41/85 (48%), Positives = 53/85 (62%), Gaps = 8/85 (9%)
NCBI
Show Blast
XP_014226331.1 PREDICTED: low-density lipoprotein receptor-related protein 2 [Trichogramma pretiosum]
Evalue: 8e-12 | Bitscore: 72
Identities = 37/82 (45%), Positives = 51/82 (62%), Gaps = 6/82 (7%)
NCBI
Show Blast
KFM82299.1 Low-density lipoprotein receptor-related protein 2, partial [Stegodyphus mimosarum]
Evalue: 1e-11 | Bitscore: 72
Identities = 36/81 (44%), Positives = 51/81 (63%), Gaps = 2/81 (2%)
NCBI
Show Blast
XP_008213102.1 PREDICTED: LOW QUALITY PROTEIN: low-density lipoprotein receptor-related protein 2-like [Nasonia vitripennis]
Evalue: 1e-11 | Bitscore: 72
Identities = 37/81 (46%), Positives = 51/81 (63%), Gaps = 6/81 (7%)
NCBI
Show Blast
XP_001944217.2 PREDICTED: low-density lipoprotein receptor-related protein 2 [Acyrthosiphon pisum]
Evalue: 2e-11 | Bitscore: 72
Identities = 37/81 (46%), Positives = 52/81 (64%), Gaps = 6/81 (7%)
NCBI
Show Blast
ETN64538.1 low-density lipoprotein receptor (ldl) [Anopheles darlingi]
Evalue: 2e-11 | Bitscore: 71
Identities = 38/83 (46%), Positives = 51/83 (61%), Gaps = 6/83 (7%)
NCBI
Show Blast
XP_015909717.1 PREDICTED: low-density lipoprotein receptor-related protein 2-like [Parasteatoda tepidariorum]
Evalue: 2e-11 | Bitscore: 71
Identities = 36/81 (44%), Positives = 51/81 (63%), Gaps = 2/81 (2%)
NCBI
Show Blast
XP_967627.1 PREDICTED: similar to low-density lipoprotein rece 1731
Evalue: 7e-14 | Bitscore: 70
Identities = 37/81 (46%), Positives = 52/81 (64%), Gaps = 6/81 (7%)
Insects
Show Blast
XP_967627.1 PREDICTED: similar to low-density lipoprotein rece 1731
Evalue: 7e-14 | Bitscore: 70
Identities = 37/81 (46%), Positives = 52/81 (64%), Gaps = 6/81 (7%)
Insects
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

CDS  

Locus ID
tetur02g03950
Redo Blast
CDS Length
363 nucleotides
CDS Sequence

Protein 

Locus ID
tetur02g03950
Redo Blast
Protein Length
121 aminoacids
Protein Sequence
Signal Peptide
na
Subcellular Localisation
na

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDCCZA13098.b1 Support ModelY More Info
EST IDCCZA13098.g1 Support ModelN More Info
CommentEST is not matching the given gene model. EST is mapped on the opposite strand
EST IDJUNC00018782.adu Support ModelY More Info
EST IDJUNC00022744.bea Support ModelY More Info
EST IDJUNC00025391.lar Support ModelY More Info
EST IDJUNC00025993.nym Support ModelY More Info
EST IDJUNC00027505.emb Support ModelY More Info
EST IDJUNC00030169.ara Support ModelY More Info
 
General Comments
n/a"20160216000000