Logo bioIT Logo VIB Logo Ugent Logo ElixirBE
Contact:
Bioinformatics Gent
Principal Investigator:

ORCAE Technical Support:

Tetranychus urticae


Gene ID
tetur01g16040
Locus
tetur01g16040
Functional Description
Bm trachealess
Gene Type
protein-coding gene
Contig
scaffold_1
Last Modified On
19 February 2016 0h00
History

Annotator  

Name
Cao Thi Ngoc Phuong
Email
phcao@psb.vib-ugent.be
Lab
Bioinformatics and Evolutionary Genomics
Status
active

Gene Actions  

Sorry, only history comparison allowed for non logged in users!! Compare this version with :
Go!

Gene Function 

Short Name
trh
Alternative Names
TETUR02g08590
Definition
Bm trachealess
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Read Counts 

Gene Ontology 

Cellular Component
1.
nucleus

Molecular Function
1.
protein binding

2.
obsolete transcription regulator activity

3.
protein dimerization activity

Biological Process
1.
regulation of transcription, DNA-templated

 
Comment
Unknown GO IDs: GO:0045449

Protein Domains 


Domain IDDescriptionDatabase
PTHR23043 n/a PANTHER
IPR013767 PAS fold InterPro
TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. TMHMM
IPR000014 PAS domain InterPro
IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain InterPro
G3DSA:3.30.450.20 n/a Gene3D
CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. Phobius
NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region Phobius
IPR013655 PAS fold-3 InterPro
SignalP-noTM n/a SignalP_EUK
Coil n/a Coils
PTHR23043:SF26 n/a PANTHER
TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. Phobius

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_015789644.1 PREDICTED: neuronal PAS domain-containing protein 1-like isoform X2 [Tetranychus urticae]
Evalue: 0.0 | Bitscore: 1017
Identities = 771/771 (100%), Positives = 771/771 (100%), Gaps = 0/771 (0%)
NCBI
Show Blast
XP_015789636.1 PREDICTED: neuronal PAS domain-containing protein 1-like isoform X1 [Tetranychus urticae]
Evalue: 0.0 | Bitscore: 1009
Identities = 770/774 (99%), Positives = 771/774 (99%), Gaps = 3/774 (0%)
NCBI
Show Blast
XP_013774186.1 PREDICTED: protein trachealess-like [Limulus polyphemus]
Evalue: 9e-163 | Bitscore: 509
Identities = 267/429 (62%), Positives = 317/429 (74%), Gaps = 34/429 (8%)
NCBI
Show Blast
XP_014275367.1 PREDICTED: protein trachealess isoform X5 [Halyomorpha halys]
Evalue: 2e-159 | Bitscore: 496
Identities = 264/435 (61%), Positives = 312/435 (72%), Gaps = 41/435 (9%)
NCBI
Show Blast
XP_014275365.1 PREDICTED: protein trachealess isoform X3 [Halyomorpha halys]
Evalue: 3e-159 | Bitscore: 496
Identities = 269/459 (59%), Positives = 317/459 (69%), Gaps = 46/459 (10%)
NCBI
Show Blast
XP_011166209.1 PREDICTED: protein trachealess isoform X2 [Solenopsis invicta]
Evalue: 7e-158 | Bitscore: 495
Identities = 258/429 (60%), Positives = 315/429 (73%), Gaps = 30/429 (7%)
NCBI
Show Blast
XP_011876411.1 PREDICTED: protein trachealess isoform X2 [Vollenhovia emeryi]
Evalue: 4e-157 | Bitscore: 495
Identities = 258/437 (59%), Positives = 321/437 (73%), Gaps = 30/437 (7%)
NCBI
Show Blast
XP_012528677.1 PREDICTED: protein trachealess isoform X2 [Monomorium pharaonis]
Evalue: 6e-157 | Bitscore: 494
Identities = 258/437 (59%), Positives = 319/437 (73%), Gaps = 30/437 (7%)
NCBI
Show Blast
XP_014248928.1 PREDICTED: protein trachealess isoform X3 [Cimex lectularius]
Evalue: 2e-158 | Bitscore: 493
Identities = 266/469 (57%), Positives = 324/469 (69%), Gaps = 51/469 (11%)
NCBI
Show Blast
XP_015590968.1 PREDICTED: protein trachealess isoform X2 [Cephus cinctus]
Evalue: 1e-156 | Bitscore: 493
Identities = 260/437 (59%), Positives = 318/437 (73%), Gaps = 30/437 (7%)
NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

CDS  

Locus ID
tetur01g16040
Redo Blast
CDS Length
2316 nucleotides
CDS Sequence

Protein 

Locus ID
tetur01g16040
Redo Blast
Protein Length
772 aminoacids
Protein Sequence
Signal Peptide
na
Subcellular Localisation
na

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDCCIO1147.b1 Support ModelY More Info
EST IDCCIO3131.b1 Support ModelY More Info
EST IDCCIO4308.b1 Support ModelY More Info
EST IDJUNC00023808.adu Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00023809.adu Support ModelN More Info
CommentEST is inconsistent with the given gene model. EST is mapped on the opposite strand of the predicted model
EST IDJUNC00023810.adu Support ModelY More Info
EST IDJUNC00028833.bea Support ModelY More Info
EST IDJUNC00028834.bea Support ModelY More Info
EST IDJUNC00028835.bea Support ModelN More Info
CommentEST has one or more non canonical splice site(s)
EST IDJUNC00028836.bea Support ModelY More Info
EST IDJUNC00028837.bea Support ModelY More Info
EST IDJUNC00028838.bea Support ModelY More Info
EST IDJUNC00028840.bea Support ModelY More Info
EST IDJUNC00031880.lar Support ModelY More Info
EST IDJUNC00031881.lar Support ModelY More Info
EST IDJUNC00031882.lar Support ModelY More Info
EST IDJUNC00031883.lar Support ModelY More Info
EST IDJUNC00031884.lar Support ModelY More Info
EST IDJUNC00031885.lar Support ModelY More Info
EST IDJUNC00031886.lar Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00031887.lar Support ModelY More Info
EST IDJUNC00031888.lar Support ModelY More Info
EST IDJUNC00032728.nym Support ModelY More Info
EST IDJUNC00032729.nym Support ModelN More Info
CommentEST has one or more non canonical splice site(s)
EST IDJUNC00032730.nym Support ModelY More Info
EST IDJUNC00032731.nym Support ModelY More Info
EST IDJUNC00032732.nym Support ModelY More Info
EST IDJUNC00032733.nym Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00032734.nym Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00032735.nym Support ModelY More Info
EST IDJUNC00032736.nym Support ModelY More Info
EST IDJUNC00034581.emb Support ModelY More Info
EST IDJUNC00034582.emb Support ModelN More Info
CommentEST is inconsistent with the given gene model. EST is mapped on the opposite strand of the predicted model
EST IDJUNC00034583.emb Support ModelY More Info
EST IDJUNC00034584.emb Support ModelN More Info
CommentEST has one or more non canonical splice site(s)
EST IDJUNC00034585.emb Support ModelY More Info
EST IDJUNC00034586.emb Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00034587.emb Support ModelY More Info
EST IDJUNC00034588.emb Support ModelY More Info
EST IDJUNC00034589.emb Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00034590.emb Support ModelY More Info
EST IDJUNC00034591.emb Support ModelY More Info
EST IDJUNC00034592.emb Support ModelY More Info
EST IDJUNC00038036.ara Support ModelY More Info
EST IDJUNC00038037.ara Support ModelY More Info
EST IDJUNC00038038.ara Support ModelY More Info
EST IDJUNC00038039.ara Support ModelN More Info
CommentEST has one or more non canonical splice site(s)
EST IDJUNC00038040.ara Support ModelY More Info
EST IDJUNC00038041.ara Support ModelY More Info
EST IDJUNC00038042.ara Support ModelY More Info
EST IDJUNC00038043.ara Support ModelY More Info
EST IDJUNC00038044.ara Support ModelY More Info
EST IDCCIO1147.b1 Support ModelY More Info
EST IDCCIO3131.b1 Support ModelY More Info
EST IDCCIO4308.b1 Support ModelY More Info
EST IDJUNC00023808.adu Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00023809.adu Support ModelN More Info
CommentEST is inconsistent with the given gene model. EST is mapped on the opposite strand of the predicted model
EST IDJUNC00023810.adu Support ModelY More Info
EST IDJUNC00028833.bea Support ModelY More Info
EST IDJUNC00028834.bea Support ModelY More Info
EST IDJUNC00028835.bea Support ModelN More Info
CommentEST has one or more non canonical splice site(s)
EST IDJUNC00028836.bea Support ModelY More Info
EST IDJUNC00028837.bea Support ModelY More Info
EST IDJUNC00028838.bea Support ModelY More Info
EST IDJUNC00028840.bea Support ModelY More Info
EST IDJUNC00031880.lar Support ModelY More Info
EST IDJUNC00031881.lar Support ModelY More Info
EST IDJUNC00031882.lar Support ModelY More Info
EST IDJUNC00031883.lar Support ModelY More Info
EST IDJUNC00031884.lar Support ModelY More Info
EST IDJUNC00031885.lar Support ModelY More Info
EST IDJUNC00031886.lar Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00031887.lar Support ModelY More Info
EST IDJUNC00031888.lar Support ModelY More Info
EST IDJUNC00032728.nym Support ModelY More Info
EST IDJUNC00032729.nym Support ModelN More Info
CommentEST has one or more non canonical splice site(s)
EST IDJUNC00032730.nym Support ModelY More Info
EST IDJUNC00032731.nym Support ModelY More Info
EST IDJUNC00032732.nym Support ModelY More Info
EST IDJUNC00032733.nym Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00032734.nym Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00032735.nym Support ModelY More Info
EST IDJUNC00032736.nym Support ModelY More Info
EST IDJUNC00034581.emb Support ModelY More Info
EST IDJUNC00034582.emb Support ModelN More Info
CommentEST is inconsistent with the given gene model. EST is mapped on the opposite strand of the predicted model
EST IDJUNC00034583.emb Support ModelY More Info
EST IDJUNC00034584.emb Support ModelN More Info
CommentEST has one or more non canonical splice site(s)
EST IDJUNC00034585.emb Support ModelY More Info
EST IDJUNC00034586.emb Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00034587.emb Support ModelY More Info
EST IDJUNC00034588.emb Support ModelY More Info
EST IDJUNC00034589.emb Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00034590.emb Support ModelY More Info
EST IDJUNC00034591.emb Support ModelY More Info
EST IDJUNC00034592.emb Support ModelY More Info
EST IDJUNC00038036.ara Support ModelY More Info
EST IDJUNC00038037.ara Support ModelY More Info
EST IDJUNC00038038.ara Support ModelY More Info
EST IDJUNC00038039.ara Support ModelN More Info
CommentEST has one or more non canonical splice site(s)
EST IDJUNC00038040.ara Support ModelY More Info
EST IDJUNC00038041.ara Support ModelY More Info
EST IDJUNC00038042.ara Support ModelY More Info
EST IDJUNC00038043.ara Support ModelY More Info
EST IDJUNC00038044.ara Support ModelY More Info
EST IDCCIO1147.b1 Support ModelY More Info
EST IDCCIO3131.b1 Support ModelY More Info
EST IDCCIO4308.b1 Support ModelY More Info
EST IDJUNC00023808.adu Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00023809.adu Support ModelN More Info
CommentEST is inconsistent with the given gene model. EST is mapped on the opposite strand of the predicted model
EST IDJUNC00023810.adu Support ModelY More Info
EST IDJUNC00028833.bea Support ModelY More Info
EST IDJUNC00028834.bea Support ModelY More Info
EST IDJUNC00028835.bea Support ModelN More Info
CommentEST has one or more non canonical splice site(s)
EST IDJUNC00028836.bea Support ModelY More Info
EST IDJUNC00028837.bea Support ModelY More Info
EST IDJUNC00028838.bea Support ModelY More Info
EST IDJUNC00028840.bea Support ModelY More Info
EST IDJUNC00031880.lar Support ModelY More Info
EST IDJUNC00031881.lar Support ModelY More Info
EST IDJUNC00031882.lar Support ModelY More Info
EST IDJUNC00031883.lar Support ModelY More Info
EST IDJUNC00031884.lar Support ModelY More Info
EST IDJUNC00031885.lar Support ModelY More Info
EST IDJUNC00031886.lar Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00031887.lar Support ModelY More Info
EST IDJUNC00031888.lar Support ModelY More Info
EST IDJUNC00032728.nym Support ModelY More Info
EST IDJUNC00032729.nym Support ModelN More Info
CommentEST has one or more non canonical splice site(s)
EST IDJUNC00032730.nym Support ModelY More Info
EST IDJUNC00032731.nym Support ModelY More Info
EST IDJUNC00032732.nym Support ModelY More Info
EST IDJUNC00032733.nym Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00032734.nym Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00032735.nym Support ModelY More Info
EST IDJUNC00032736.nym Support ModelY More Info
EST IDJUNC00034581.emb Support ModelY More Info
EST IDJUNC00034582.emb Support ModelN More Info
CommentEST is inconsistent with the given gene model. EST is mapped on the opposite strand of the predicted model
EST IDJUNC00034583.emb Support ModelY More Info
EST IDJUNC00034584.emb Support ModelN More Info
CommentEST has one or more non canonical splice site(s)
EST IDJUNC00034585.emb Support ModelY More Info
EST IDJUNC00034586.emb Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00034587.emb Support ModelY More Info
EST IDJUNC00034588.emb Support ModelY More Info
EST IDJUNC00034589.emb Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00034590.emb Support ModelY More Info
EST IDJUNC00034591.emb Support ModelY More Info
EST IDJUNC00034592.emb Support ModelY More Info
EST IDJUNC00038036.ara Support ModelY More Info
EST IDJUNC00038037.ara Support ModelY More Info
EST IDJUNC00038038.ara Support ModelY More Info
EST IDJUNC00038039.ara Support ModelN More Info
CommentEST has one or more non canonical splice site(s)
EST IDJUNC00038040.ara Support ModelY More Info
EST IDJUNC00038041.ara Support ModelY More Info
EST IDJUNC00038042.ara Support ModelY More Info
EST IDJUNC00038043.ara Support ModelY More Info
EST IDJUNC00038044.ara Support ModelY More Info
 
General Comments
n/a"20160216000000