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Tetranychus urticae


Gene ID
tetur01g16020
Locus
tetur01g16020
Functional Description
I-type lysozyme
Gene Type
protein-coding gene
Contig
scaffold_1
Last Modified On
19 February 2016 0h00
History

Annotator  

Name
Pierre Rouzé
Email
pierre.rouze@psb.ugent.be
Lab
VIB U.Gent
Status
active

Gene Actions  

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Gene Function 

Short Name
LYSI2
Alternative Names
TETUR02g08570
Definition
I-type lysozyme
Additional Functional Description
SP: 1-25
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Read Counts 

Gene Ontology 

Cellular Component
n/a
Molecular Function
1.
lysozyme activity

Biological Process
n/a

Protein Domains 


Domain IDDescriptionDatabase
CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. Phobius
NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region Phobius
IPR008597 Destabilase InterPro
TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. TMHMM
IPR023346 Lysozyme-like domain InterPro
TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. Phobius

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_015789666.1 PREDICTED: lysozyme 2-like [Tetranychus urticae]
Evalue: 2e-127 | Bitscore: 368
Identities = 176/176 (100%), Positives = 176/176 (100%), Gaps = 0/176 (0%)
NCBI
Show Blast
ALJ10934.1 putative lysozyme [Dolomedes sulfureus]
Evalue: 7e-31 | Bitscore: 120
Identities = 58/151 (38%), Positives = 92/151 (61%), Gaps = 7/151 (5%)
NCBI
Show Blast
XP_013792997.1 PREDICTED: lysozyme-like [Limulus polyphemus]
Evalue: 9e-30 | Bitscore: 117
Identities = 57/125 (46%), Positives = 77/125 (62%), Gaps = 2/125 (2%)
NCBI
Show Blast
KFM67035.1 Lysozyme 1, partial [Stegodyphus mimosarum]
Evalue: 6e-29 | Bitscore: 117
Identities = 56/132 (42%), Positives = 77/132 (58%), Gaps = 2/132 (2%)
NCBI
Show Blast
tetur03g05900 length:897 (mRNA) (DESP2) (Protein with N & C-terminal Destabilase Domains) (n/a) (lysozyme)
Evalue: 7e-30 | Bitscore: 116
Identities = 56/127 (44%), Positives = 80/127 (63%), Gaps = 3/127 (2%)
Self
Show Blast
tetur03g05900 length:897 (mRNA) (DESP2) (Protein with N & C-terminal Destabilase Domains) (n/a) (lysozyme)
Evalue: 7e-30 | Bitscore: 116
Identities = 56/127 (44%), Positives = 80/127 (63%), Gaps = 3/127 (2%)
Self
Show Blast
tetur03g05900 length:897 (mRNA) (DESP2) (Protein with N & C-terminal Destabilase Domains) (n/a) (lysozyme)
Evalue: 7e-30 | Bitscore: 116
Identities = 56/127 (44%), Positives = 80/127 (63%), Gaps = 3/127 (2%)
Self
Show Blast
tetur03g05900 length:897 (mRNA) (DESP2) (Secreted triple lysozyme; Protein with N; central & C-terminal Destabilase Domains) (DESP2)
Evalue: 7e-30 | Bitscore: 116
Identities = 56/127 (44%), Positives = 80/127 (63%), Gaps = 3/127 (2%)
Self
Show Blast
tetur03g05900 length:897 (mRNA) (DESP2) (Secreted triple lysozyme; Protein with N; central & C-terminal Destabilase Domains) (DESP2)
Evalue: 7e-30 | Bitscore: 116
Identities = 56/127 (44%), Positives = 80/127 (63%), Gaps = 3/127 (2%)
Self
Show Blast
XP_015795983.1 PREDICTED: uncharacterized protein LOC107372289 isoform X2 [Tetranychus urticae]
Evalue: 3e-26 | Bitscore: 116
Identities = 56/127 (44%), Positives = 80/127 (63%), Gaps = 3/127 (2%)
NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

CDS  

Locus ID
tetur01g16020
Redo Blast
CDS Length
531 nucleotides
CDS Sequence

Protein 

Locus ID
tetur01g16020
Redo Blast
Protein Length
177 aminoacids
Protein Sequence
Signal Peptide
na
Subcellular Localisation
na

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDJUNC00023806.adu Support ModelY More Info
EST IDJUNC00023807.adu Support ModelY More Info
EST IDJUNC00031879.lar Support ModelY More Info
EST IDJUNC00034580.emb Support ModelY More Info
EST IDJUNC00038034.ara Support ModelY More Info
EST IDJUNC00038035.ara Support ModelY More Info
EST IDJUNC00023806.adu Support ModelY More Info
EST IDJUNC00023807.adu Support ModelY More Info
EST IDJUNC00031879.lar Support ModelY More Info
EST IDJUNC00034580.emb Support ModelY More Info
EST IDJUNC00038034.ara Support ModelY More Info
EST IDJUNC00038035.ara Support ModelY More Info
EST IDJUNC00023806.adu Support ModelY More Info
EST IDJUNC00023807.adu Support ModelY More Info
EST IDJUNC00031879.lar Support ModelY More Info
EST IDJUNC00034580.emb Support ModelY More Info
EST IDJUNC00038034.ara Support ModelY More Info
EST IDJUNC00038035.ara Support ModelY More Info
EST IDJUNC00023806.adu Support ModelY More Info
EST IDJUNC00023807.adu Support ModelY More Info
EST IDJUNC00031879.lar Support ModelY More Info
EST IDJUNC00034580.emb Support ModelY More Info
EST IDJUNC00038034.ara Support ModelY More Info
EST IDJUNC00038035.ara Support ModelY More Info
 
General Comments
n/a"20160216000000