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Tetranychus urticae


Gene ID
tetur01g14380
Locus
tetur01g14380
Functional Description
PREDICTED: similar to shc transforming protein
Gene Type
protein-coding gene
Contig
scaffold_1
Last Modified On
19 February 2016 0h00
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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Gene Function 

Short Name
n/a
Alternative Names
TETUR02g07070
Definition
PREDICTED: similar to shc transforming protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Read Counts 

Gene Ontology 

Cellular Component
n/a
Molecular Function
1.
protein binding

Biological Process
1.
intracellular signal transduction

Protein Domains 


Domain IDDescriptionDatabase
SSF50729 n/a SUPERFAMILY
TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. TMHMM
IPR006020 PTB/PI domain InterPro
PTHR10337 n/a PANTHER
CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. Phobius
NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region Phobius
IPR000980 SH2 domain InterPro
IPR006019 Phosphotyrosine interaction domain, Shc-like InterPro
IPR011993 PH domain-like InterPro
TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. Phobius

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_015784894.1 PREDICTED: SHC-transforming protein 2-like [Tetranychus urticae]
Evalue: 0.0 | Bitscore: 958
Identities = 507/507 (100%), Positives = 507/507 (100%), Gaps = 0/507 (0%)
NCBI
Show Blast
XP_013775445.1 PREDICTED: SHC-transforming protein 1-like [Limulus polyphemus]
Evalue: 7e-129 | Bitscore: 401
Identities = 242/500 (48%), Positives = 305/500 (61%), Gaps = 51/500 (10%)
NCBI
Show Blast
XP_015904061.1 PREDICTED: SHC-transforming protein 1-like isoform X1 [Parasteatoda tepidariorum]
Evalue: 6e-127 | Bitscore: 391
Identities = 230/500 (46%), Positives = 300/500 (60%), Gaps = 65/500 (13%)
NCBI
Show Blast
KFM71165.1 SHC-transforming protein 1, partial [Stegodyphus mimosarum]
Evalue: 2e-125 | Bitscore: 387
Identities = 227/486 (47%), Positives = 294/486 (60%), Gaps = 51/486 (10%)
NCBI
Show Blast
XP_015608285.1 PREDICTED: SHC-transforming protein 1 [Cephus cinctus]
Evalue: 2e-117 | Bitscore: 365
Identities = 217/494 (44%), Positives = 277/494 (56%), Gaps = 87/494 (18%)
NCBI
Show Blast
XP_011506513.1 PREDICTED: SHC-transforming protein 1 [Ceratosolen solmsi marchali]
Evalue: 3e-117 | Bitscore: 365
Identities = 223/511 (44%), Positives = 288/511 (56%), Gaps = 119/511 (23%)
NCBI
Show Blast
XP_008208036.1 PREDICTED: SHC-transforming protein 1 isoform X2 [Nasonia vitripennis]
Evalue: 6e-117 | Bitscore: 364
Identities = 224/514 (44%), Positives = 283/514 (55%), Gaps = 125/514 (24%)
NCBI
Show Blast
XP_001602298.2 PREDICTED: SHC-transforming protein 1 isoform X1 [Nasonia vitripennis]
Evalue: 1e-116 | Bitscore: 364
Identities = 224/514 (44%), Positives = 283/514 (55%), Gaps = 125/514 (24%)
NCBI
Show Blast
XP_011701803.1 PREDICTED: SHC-transforming protein 1 [Wasmannia auropunctata]
Evalue: 5e-115 | Bitscore: 359
Identities = 214/506 (42%), Positives = 278/506 (55%), Gaps = 111/506 (22%)
NCBI
Show Blast
XP_011334838.1 PREDICTED: SHC-transforming protein 1 [Cerapachys biroi]
Evalue: 6e-115 | Bitscore: 359
Identities = 218/506 (43%), Positives = 281/506 (56%), Gaps = 113/506 (22%)
NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

CDS  

Locus ID
tetur01g14380
Redo Blast
CDS Length
1524 nucleotides
CDS Sequence

Protein 

Locus ID
tetur01g14380
Redo Blast
Protein Length
508 aminoacids
Protein Sequence
Signal Peptide
na
Subcellular Localisation
na

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDCCIN6174.b1 Support ModelY More Info
EST IDCCIN6174.g1 Support ModelY More Info
EST IDCCIN6178.b1 Support ModelY More Info
EST IDCCIN6178.g1 Support ModelY More Info
EST IDJUNC00023548.adu Support ModelY More Info
EST IDJUNC00028515.bea Support ModelY More Info
EST IDJUNC00028516.bea Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00031501.lar Support ModelY More Info
EST IDJUNC00032377.nym Support ModelY More Info
EST IDJUNC00034189.emb Support ModelY More Info
EST IDJUNC00037610.ara Support ModelY More Info
EST IDJUNC00037611.ara Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00037609.ara Support ModelY More Info
EST IDCCIN6174.b1 Support ModelY More Info
EST IDCCIN6174.g1 Support ModelY More Info
EST IDCCIN6178.b1 Support ModelY More Info
EST IDCCIN6178.g1 Support ModelY More Info
EST IDJUNC00023548.adu Support ModelY More Info
EST IDJUNC00028515.bea Support ModelY More Info
EST IDJUNC00028516.bea Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00031501.lar Support ModelY More Info
EST IDJUNC00032377.nym Support ModelY More Info
EST IDJUNC00034189.emb Support ModelY More Info
EST IDJUNC00037610.ara Support ModelY More Info
EST IDJUNC00037611.ara Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00037609.ara Support ModelY More Info
EST IDCCIN6174.b1 Support ModelY More Info
EST IDCCIN6174.g1 Support ModelY More Info
EST IDCCIN6178.b1 Support ModelY More Info
EST IDCCIN6178.g1 Support ModelY More Info
EST IDJUNC00023548.adu Support ModelY More Info
EST IDJUNC00028515.bea Support ModelY More Info
EST IDJUNC00028516.bea Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00031501.lar Support ModelY More Info
EST IDJUNC00032377.nym Support ModelY More Info
EST IDJUNC00034189.emb Support ModelY More Info
EST IDJUNC00037610.ara Support ModelY More Info
EST IDJUNC00037611.ara Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00037609.ara Support ModelY More Info
EST IDCCIN6174.b1 Support ModelY More Info
EST IDCCIN6174.g1 Support ModelY More Info
EST IDCCIN6178.b1 Support ModelY More Info
EST IDCCIN6178.g1 Support ModelY More Info
EST IDJUNC00023548.adu Support ModelY More Info
EST IDJUNC00028515.bea Support ModelY More Info
EST IDJUNC00028516.bea Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00031501.lar Support ModelY More Info
EST IDJUNC00032377.nym Support ModelY More Info
EST IDJUNC00034189.emb Support ModelY More Info
EST IDJUNC00037610.ara Support ModelY More Info
EST IDJUNC00037611.ara Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00037609.ara Support ModelY More Info
 
General Comments
n/a"20160216000000