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Tetranychus urticae


Gene ID
tetur01g08860
Locus
tetur01g08860
Functional Description
Low density lipoprotein-receptor; class A (cysteine-rich) repeat
Gene Type
protein-coding gene
Contig
scaffold_1
Last Modified On
19 February 2016 0h00
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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Gene Function 

Short Name
n/a
Alternative Names
TETUR04g28200
Definition
Low density lipoprotein-receptor; class A (cysteine-rich) repeat
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Read Counts 

Gene Ontology 

Cellular Component
n/a
Molecular Function
1.
protein binding

Biological Process
n/a

Protein Domains 


Domain IDDescriptionDatabase
IPR002172 Low-density lipoprotein (LDL) receptor class A repeat InterPro
SIGNAL_PEPTIDE Signal peptide region Phobius
PTHR10529 n/a PANTHER
IPR023415 Low-density lipoprotein (LDL) receptor class A, conserved site InterPro
SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. Phobius
SignalP-TM n/a SignalP_GRAM_POSITIVE
SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. Phobius
NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region Phobius
SignalP-noTM n/a SignalP_EUK
SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. Phobius

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_015781467.1 PREDICTED: rho GTPase-activating protein gacK-like [Tetranychus urticae]
Evalue: 4e-155 | Bitscore: 446
Identities = 236/236 (100%), Positives = 236/236 (100%), Gaps = 0/236 (0%)		 NCBI
Show Blast
tetur08g01870 length:230 (mRNA) (n/a) (PREDICTED: similar to mosaic protein LR11)
Evalue: 5e-30 | Bitscore: 113
Identities = 78/193 (40%), Positives = 95/193 (49%), Gaps = 46/193 (24%)		 Self
Show Blast
tetur08g01870 length:230 (mRNA) (n/a) (PREDICTED: similar to mosaic protein LR11)
Evalue: 5e-30 | Bitscore: 113
Identities = 78/193 (40%), Positives = 95/193 (49%), Gaps = 46/193 (24%)		 Self
Show Blast
tetur08g01870 length:230 (mRNA) (n/a) (PREDICTED: similar to mosaic protein LR11)
Evalue: 5e-30 | Bitscore: 113
Identities = 78/193 (40%), Positives = 95/193 (49%), Gaps = 46/193 (24%)		 Self
Show Blast
XP_015785250.1 PREDICTED: low-density lipoprotein receptor-related protein 5-like [Tetranychus urticae]
Evalue: 2e-26 | Bitscore: 113
Identities = 78/193 (40%), Positives = 95/193 (49%), Gaps = 46/193 (24%)		 NCBI
Show Blast
XP_014263217.1 PREDICTED: sortilin-related receptor isoform X1 [Maylandia zebra]
Evalue: 4e-12 | Bitscore: 76
Identities = 41/93 (44%), Positives = 53/93 (57%), Gaps = 3/93 (3%)		 NCBI
Show Blast
XP_005753858.1 PREDICTED: sortilin-related receptor isoform X1 [Pundamilia nyererei]
Evalue: 5e-12 | Bitscore: 76
Identities = 41/93 (44%), Positives = 53/93 (57%), Gaps = 3/93 (3%)		 NCBI
Show Blast
XP_014263218.1 PREDICTED: sortilin-related receptor isoform X2 [Maylandia zebra]
Evalue: 7e-12 | Bitscore: 75
Identities = 40/92 (43%), Positives = 51/92 (55%), Gaps = 2/92 (2%)		 NCBI
Show Blast
XP_005753859.1 PREDICTED: sortilin-related receptor isoform X2 [Pundamilia nyererei]
Evalue: 7e-12 | Bitscore: 75
Identities = 40/92 (43%), Positives = 51/92 (55%), Gaps = 2/92 (2%)		 NCBI
Show Blast
XP_014185477.1 PREDICTED: LOW QUALITY PROTEIN: sortilin-related receptor-like [Haplochromis burtoni]
Evalue: 8e-12 | Bitscore: 75
Identities = 41/93 (44%), Positives = 53/93 (57%), Gaps = 3/93 (3%)		 NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

CDS  

Locus ID
tetur01g08860
Redo Blast
CDS Length
729 nucleotides
CDS Sequence

Protein 

Locus ID
tetur01g08860
Redo Blast
Protein Length
243 aminoacids
Protein Sequence
Signal Peptide
na
Subcellular Localisation
na

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDJUNC00027380.bea Support ModelY More Info
EST IDJUNC00030322.lar Support ModelY More Info
EST IDJUNC00030323.lar Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00031136.nym Support ModelY More Info
EST IDJUNC00031137.nym Support ModelN More Info
CommentEST has one or more non canonical splice site(s) EST is mapped on the opposite strand of the predicted model
EST IDJUNC00032907.emb Support ModelY More Info
EST IDJUNC00032908.emb Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00036186.ara Support ModelY More Info
EST IDJUNC00036187.ara Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00036188.ara Support ModelN More Info
CommentEST has one or more non canonical splice site(s) EST is mapped on the opposite strand of the predicted model
EST IDJUNC00027380.bea Support ModelY More Info
EST IDJUNC00030322.lar Support ModelY More Info
EST IDJUNC00030323.lar Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00031136.nym Support ModelY More Info
EST IDJUNC00031137.nym Support ModelN More Info
CommentEST has one or more non canonical splice site(s) EST is mapped on the opposite strand of the predicted model
EST IDJUNC00032907.emb Support ModelY More Info
EST IDJUNC00032908.emb Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00036186.ara Support ModelY More Info
EST IDJUNC00036187.ara Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00036188.ara Support ModelN More Info
CommentEST has one or more non canonical splice site(s) EST is mapped on the opposite strand of the predicted model
EST IDJUNC00027380.bea Support ModelY More Info
EST IDJUNC00030322.lar Support ModelY More Info
EST IDJUNC00030323.lar Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00031136.nym Support ModelY More Info
EST IDJUNC00031137.nym Support ModelN More Info
CommentEST has one or more non canonical splice site(s) EST is mapped on the opposite strand of the predicted model
EST IDJUNC00032907.emb Support ModelY More Info
EST IDJUNC00032908.emb Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00036186.ara Support ModelY More Info
EST IDJUNC00036187.ara Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDJUNC00036188.ara Support ModelN More Info
CommentEST has one or more non canonical splice site(s) EST is mapped on the opposite strand of the predicted model
 
General Comments
n/a"20160216000000