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Tetranychus urticae


Gene ID
tetur01g01180
Locus
tetur01g01180
Functional Description
Low density lipoprotein-receptor; class A (cysteine-rich) repeat
Gene Type
protein-coding gene
Contig
scaffold_1
Last Modified On
19 February 2016 0h00
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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Gene Function 

Short Name
n/a
Alternative Names
TETUR04g22090
Definition
Low density lipoprotein-receptor; class A (cysteine-rich) repeat
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Read Counts 

Gene Ontology 

Cellular Component
n/a
Molecular Function
1.
protein binding

Biological Process
n/a

Protein Domains 


Domain IDDescriptionDatabase
IPR002172 Low-density lipoprotein (LDL) receptor class A repeat InterPro
TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. TMHMM
PTHR10529 n/a PANTHER
IPR000082 SEA domain InterPro
IPR023415 Low-density lipoprotein (LDL) receptor class A, conserved site InterPro
SignalP-TM n/a SignalP_GRAM_POSITIVE
CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. Phobius
NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region Phobius
TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. Phobius

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_015791137.1 PREDICTED: uncharacterized protein LOC107367894 [Tetranychus urticae]
Evalue: 0.0 | Bitscore: 973
Identities = 550/550 (100%), Positives = 550/550 (100%), Gaps = 0/550 (0%)
NCBI
Show Blast
XP_006621474.1 PREDICTED: low-density lipoprotein receptor-related protein-like isoform X1 [Apis dorsata]
Evalue: 1e-21 | Bitscore: 113
Identities = 46/81 (56%), Positives = 58/81 (71%), Gaps = 2/81 (2%)
NCBI
Show Blast
XP_006621477.1 PREDICTED: low-density lipoprotein receptor-related protein-like isoform X4 [Apis dorsata]
Evalue: 1e-21 | Bitscore: 113
Identities = 46/81 (56%), Positives = 58/81 (71%), Gaps = 2/81 (2%)
NCBI
Show Blast
XP_006570450.1 PREDICTED: low-density lipoprotein receptor-related protein 2-like [Apis mellifera]
Evalue: 1e-21 | Bitscore: 113
Identities = 46/81 (56%), Positives = 58/81 (71%), Gaps = 2/81 (2%)
NCBI
Show Blast
XP_006621476.1 PREDICTED: low-density lipoprotein receptor-related protein-like isoform X3 [Apis dorsata]
Evalue: 1e-21 | Bitscore: 113
Identities = 46/81 (56%), Positives = 58/81 (71%), Gaps = 2/81 (2%)
NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

CDS  

Locus ID
tetur01g01180
Redo Blast
CDS Length
1653 nucleotides
CDS Sequence

Protein 

Locus ID
tetur01g01180
Redo Blast
Protein Length
551 aminoacids
Protein Sequence
Signal Peptide
na
Subcellular Localisation
na

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDJUNC00021660.adu Support ModelY More Info
EST IDJUNC00021661.adu Support ModelY More Info
EST IDJUNC00021662.adu Support ModelY More Info
EST IDJUNC00021663.adu Support ModelY More Info
EST IDJUNC00021664.adu Support ModelY More Info
EST IDJUNC00026199.bea Support ModelY More Info
EST IDJUNC00026200.bea Support ModelY More Info
EST IDJUNC00026201.bea Support ModelY More Info
EST IDJUNC00026202.bea Support ModelY More Info
EST IDJUNC00026203.bea Support ModelY More Info
EST IDJUNC00029074.lar Support ModelY More Info
EST IDJUNC00029075.lar Support ModelY More Info
EST IDJUNC00029076.lar Support ModelY More Info
EST IDJUNC00029077.lar Support ModelN More Info
CommentEST has one or more non canonical splice site(s)
EST IDJUNC00029078.lar Support ModelY More Info
EST IDJUNC00029079.lar Support ModelY More Info
EST IDJUNC00029810.nym Support ModelY More Info
EST IDJUNC00029811.nym Support ModelN More Info
CommentEST has one or more non canonical splice site(s)
EST IDJUNC00029812.nym Support ModelY More Info
EST IDJUNC00029813.nym Support ModelY More Info
EST IDJUNC00029814.nym Support ModelY More Info
EST IDJUNC00029815.nym Support ModelY More Info
EST IDJUNC00031551.emb Support ModelY More Info
EST IDJUNC00031552.emb Support ModelY More Info
EST IDJUNC00031553.emb Support ModelY More Info
EST IDJUNC00031554.emb Support ModelY More Info
EST IDJUNC00031555.emb Support ModelN More Info
CommentEST has one or more non canonical splice site(s)
EST IDJUNC00031556.emb Support ModelY More Info
EST IDJUNC00034583.ara Support ModelY More Info
EST IDJUNC00034584.ara Support ModelN More Info
CommentEST has one or more non canonical splice site(s)
EST IDJUNC00034585.ara Support ModelY More Info
EST IDJUNC00034586.ara Support ModelY More Info
EST IDJUNC00034587.ara Support ModelY More Info
EST IDJUNC00034588.ara Support ModelY More Info
EST IDJUNC00021660.adu Support ModelY More Info
EST IDJUNC00021661.adu Support ModelY More Info
EST IDJUNC00021662.adu Support ModelY More Info
EST IDJUNC00021663.adu Support ModelY More Info
EST IDJUNC00021664.adu Support ModelY More Info
EST IDJUNC00026199.bea Support ModelY More Info
EST IDJUNC00026200.bea Support ModelY More Info
EST IDJUNC00026201.bea Support ModelY More Info
EST IDJUNC00026202.bea Support ModelY More Info
EST IDJUNC00026203.bea Support ModelY More Info
EST IDJUNC00029074.lar Support ModelY More Info
EST IDJUNC00029075.lar Support ModelY More Info
EST IDJUNC00029076.lar Support ModelY More Info
EST IDJUNC00029077.lar Support ModelN More Info
CommentEST has one or more non canonical splice site(s)
EST IDJUNC00029078.lar Support ModelY More Info
EST IDJUNC00029079.lar Support ModelY More Info
EST IDJUNC00029810.nym Support ModelY More Info
EST IDJUNC00029811.nym Support ModelN More Info
CommentEST has one or more non canonical splice site(s)
EST IDJUNC00029812.nym Support ModelY More Info
EST IDJUNC00029813.nym Support ModelY More Info
EST IDJUNC00029814.nym Support ModelY More Info
EST IDJUNC00029815.nym Support ModelY More Info
EST IDJUNC00031551.emb Support ModelY More Info
EST IDJUNC00031552.emb Support ModelY More Info
EST IDJUNC00031553.emb Support ModelY More Info
EST IDJUNC00031554.emb Support ModelY More Info
EST IDJUNC00031555.emb Support ModelN More Info
CommentEST has one or more non canonical splice site(s)
EST IDJUNC00031556.emb Support ModelY More Info
EST IDJUNC00034583.ara Support ModelY More Info
EST IDJUNC00034584.ara Support ModelN More Info
CommentEST has one or more non canonical splice site(s)
EST IDJUNC00034585.ara Support ModelY More Info
EST IDJUNC00034586.ara Support ModelY More Info
EST IDJUNC00034587.ara Support ModelY More Info
EST IDJUNC00034588.ara Support ModelY More Info
EST IDJUNC00021660.adu Support ModelY More Info
EST IDJUNC00021661.adu Support ModelY More Info
EST IDJUNC00021662.adu Support ModelY More Info
EST IDJUNC00021663.adu Support ModelY More Info
EST IDJUNC00021664.adu Support ModelY More Info
EST IDJUNC00026199.bea Support ModelY More Info
EST IDJUNC00026200.bea Support ModelY More Info
EST IDJUNC00026201.bea Support ModelY More Info
EST IDJUNC00026202.bea Support ModelY More Info
EST IDJUNC00026203.bea Support ModelY More Info
EST IDJUNC00029074.lar Support ModelY More Info
EST IDJUNC00029075.lar Support ModelY More Info
EST IDJUNC00029076.lar Support ModelY More Info
EST IDJUNC00029077.lar Support ModelN More Info
CommentEST has one or more non canonical splice site(s)
EST IDJUNC00029078.lar Support ModelY More Info
EST IDJUNC00029079.lar Support ModelY More Info
EST IDJUNC00029810.nym Support ModelY More Info
EST IDJUNC00029811.nym Support ModelN More Info
CommentEST has one or more non canonical splice site(s)
EST IDJUNC00029812.nym Support ModelY More Info
EST IDJUNC00029813.nym Support ModelY More Info
EST IDJUNC00029814.nym Support ModelY More Info
EST IDJUNC00029815.nym Support ModelY More Info
EST IDJUNC00031551.emb Support ModelY More Info
EST IDJUNC00031552.emb Support ModelY More Info
EST IDJUNC00031553.emb Support ModelY More Info
EST IDJUNC00031554.emb Support ModelY More Info
EST IDJUNC00031555.emb Support ModelN More Info
CommentEST has one or more non canonical splice site(s)
EST IDJUNC00031556.emb Support ModelY More Info
EST IDJUNC00034583.ara Support ModelY More Info
EST IDJUNC00034584.ara Support ModelN More Info
CommentEST has one or more non canonical splice site(s)
EST IDJUNC00034585.ara Support ModelY More Info
EST IDJUNC00034586.ara Support ModelY More Info
EST IDJUNC00034587.ara Support ModelY More Info
EST IDJUNC00034588.ara Support ModelY More Info
EST IDJUNC00021660.adu Support ModelY More Info
EST IDJUNC00021661.adu Support ModelY More Info
EST IDJUNC00021662.adu Support ModelY More Info
EST IDJUNC00021663.adu Support ModelY More Info
EST IDJUNC00021664.adu Support ModelY More Info
EST IDJUNC00026199.bea Support ModelY More Info
EST IDJUNC00026200.bea Support ModelY More Info
EST IDJUNC00026201.bea Support ModelY More Info
EST IDJUNC00026202.bea Support ModelY More Info
EST IDJUNC00026203.bea Support ModelY More Info
EST IDJUNC00029074.lar Support ModelY More Info
EST IDJUNC00029075.lar Support ModelY More Info
EST IDJUNC00029076.lar Support ModelY More Info
EST IDJUNC00029077.lar Support ModelN More Info
CommentEST has one or more non canonical splice site(s)
EST IDJUNC00029078.lar Support ModelY More Info
EST IDJUNC00029079.lar Support ModelY More Info
EST IDJUNC00029810.nym Support ModelY More Info
EST IDJUNC00029811.nym Support ModelN More Info
CommentEST has one or more non canonical splice site(s)
EST IDJUNC00029812.nym Support ModelY More Info
EST IDJUNC00029813.nym Support ModelY More Info
EST IDJUNC00029814.nym Support ModelY More Info
EST IDJUNC00029815.nym Support ModelY More Info
EST IDJUNC00031551.emb Support ModelY More Info
EST IDJUNC00031552.emb Support ModelY More Info
EST IDJUNC00031553.emb Support ModelY More Info
EST IDJUNC00031554.emb Support ModelY More Info
EST IDJUNC00031555.emb Support ModelN More Info
CommentEST has one or more non canonical splice site(s)
EST IDJUNC00031556.emb Support ModelY More Info
EST IDJUNC00034583.ara Support ModelY More Info
EST IDJUNC00034584.ara Support ModelN More Info
CommentEST has one or more non canonical splice site(s)
EST IDJUNC00034585.ara Support ModelY More Info
EST IDJUNC00034586.ara Support ModelY More Info
EST IDJUNC00034587.ara Support ModelY More Info
EST IDJUNC00034588.ara Support ModelY More Info
 
General Comments
n/a"20160216000000