- Gene ID
- Ot17g01610
- Locus
- Ot17g01610
- Functional Description
- putative ubiquitin-specific protease UBP6 (ISS)
- Gene Type
- protein-coding gene
- Contig
- chrom17
- Last Modified On
- 09 March 2010 14h16
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- putative ubiquitin-specific protease UBP6 (ISS)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
n/a
- Molecular Function
-
1.
cysteine-type endopeptidase activity
2.
obsolete ubiquitin thiolesterase activity
- Biological Process
-
1.
ubiquitin-dependent protein catabolic process
Protein Domains
| Domain ID | Description | Database |
|---|
|
SSF54001 |
Cysteine proteinases |
superfamily |
|
SSF54236 |
Ubiquitin-like |
superfamily |
|
IPR001394 |
Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 |
InterPro |
|
G3DSA:3.10.20.90 |
no description |
Gene3D |
|
IPR018200 |
Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site |
InterPro |
|
IPR000626 |
Ubiquitin |
InterPro |
|
PTHR10420 |
UBIQUITIN SPECIFIC PROTEASE FAMILY C19-RELATED |
HMMPanther |
|
IPR019955 |
Ubiquitin supergroup |
InterPro |
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL57888.1 |
putative ubiquitin-specific protease UBP6 (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 983
Identities = 493/493 (100%), Positives = 493/493 (100%), Gaps = 0/493 (0%) |
NCBI |
Show Blast
|
| XP_001421889.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 689
Identities = 339/483 (70%), Positives = 390/483 (80%), Gaps = 28/483 (5%) |
NCBI |
Show Blast
|
| EEH51653.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 7e-129 | Bitscore: 465
Identities = 269/521 (51%), Positives = 335/521 (64%), Gaps = 37/521 (7%) |
NCBI |
Show Blast
|
| XP_002502274.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 7e-124 | Bitscore: 448
Identities = 246/507 (48%), Positives = 320/507 (63%), Gaps = 29/507 (5%) |
NCBI |
Show Blast
|
| ABK24394.1 |
unknown [Picea sitchensis]
Evalue: 2e-98 | Bitscore: 363
Identities = 206/494 (41%), Positives = 293/494 (59%), Gaps = 31/494 (6%) |
NCBI |
Show Blast
|
| NP_001043299.1 |
Os01g0550100 [Oryza sativa (japonica cultivar-group)]
Evalue: 2e-95 | Bitscore: 354
Identities = 209/504 (41%), Positives = 289/504 (57%), Gaps = 46/504 (9%) |
NCBI |
Show Blast
|
| NP_001148768.1 |
ubiquitin carboxyl-terminal hydrolase 6 [Zea mays]
Evalue: 1e-94 | Bitscore: 351
Identities = 208/502 (41%), Positives = 284/502 (56%), Gaps = 46/502 (9%) |
NCBI |
Show Blast
|
| XP_001760451.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 1e-93 | Bitscore: 348
Identities = 207/501 (41%), Positives = 284/501 (56%), Gaps = 25/501 (4%) |
NCBI |
Show Blast
|
| NP_564596.1 |
UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6); calmodulin binding / ubiquitin-specific protease [Arabidopsis thaliana]
Evalue: 2e-93 | Bitscore: 347
Identities = 205/500 (41%), Positives = 300/500 (60%), Gaps = 32/500 (6%) |
NCBI |
Show Blast
|
| AAG42751.1 |
ubiquitin-specific protease 6 [Arabidopsis thaliana]
Evalue: 4e-93 | Bitscore: 346
Identities = 205/500 (41%), Positives = 299/500 (59%), Gaps = 32/500 (6%) |
NCBI |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAC83282.1 |
unknown [environmental sequence]
Evalue: 8e-43 | Bitscore: 174
Identities = 95/143 (66%), Positives = 103/143 (72%), Gaps = 6/143 (4%) |
GOS |
Show Blast
|
| EAD68957.1 |
unknown [environmental sequence]
Evalue: 2e-06 | Bitscore: 53
Identities = 56/196 (28%), Positives = 76/196 (38%), Gaps = 54/196 (27%) |
GOS |
Show Blast
|
| EAD19004.1 |
unknown [environmental sequence]
Evalue: 0.0003 | Bitscore: 46
Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 24/92 (26%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL57888.1 |
putative ubiquitin-specific protease UBP6 (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 983
Identities = 493/493 (100%), Positives = 493/493 (100%), Gaps = 0/493 (0%) |
NCBI |
Show Blast
|
| XP_001421889.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 689
Identities = 339/483 (70%), Positives = 390/483 (80%), Gaps = 28/483 (5%) |
NCBI |
Show Blast
|
| EEH51653.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 7e-129 | Bitscore: 465
Identities = 269/521 (51%), Positives = 335/521 (64%), Gaps = 37/521 (7%) |
NCBI |
Show Blast
|
| XP_002502274.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 7e-124 | Bitscore: 448
Identities = 246/507 (48%), Positives = 320/507 (63%), Gaps = 29/507 (5%) |
NCBI |
Show Blast
|
| ABK24394.1 |
unknown [Picea sitchensis]
Evalue: 2e-98 | Bitscore: 363
Identities = 206/494 (41%), Positives = 293/494 (59%), Gaps = 31/494 (6%) |
NCBI |
Show Blast
|
| NP_001043299.1 |
Os01g0550100 [Oryza sativa (japonica cultivar-group)]
Evalue: 2e-95 | Bitscore: 354
Identities = 209/504 (41%), Positives = 289/504 (57%), Gaps = 46/504 (9%) |
NCBI |
Show Blast
|
| NP_001148768.1 |
ubiquitin carboxyl-terminal hydrolase 6 [Zea mays]
Evalue: 1e-94 | Bitscore: 351
Identities = 208/502 (41%), Positives = 284/502 (56%), Gaps = 46/502 (9%) |
NCBI |
Show Blast
|
| XP_001760451.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 1e-93 | Bitscore: 348
Identities = 207/501 (41%), Positives = 284/501 (56%), Gaps = 25/501 (4%) |
NCBI |
Show Blast
|
| NP_564596.1 |
UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6); calmodulin binding / ubiquitin-specific protease [Arabidopsis thaliana]
Evalue: 2e-93 | Bitscore: 347
Identities = 205/500 (41%), Positives = 300/500 (60%), Gaps = 32/500 (6%) |
NCBI |
Show Blast
|
| AAG42751.1 |
ubiquitin-specific protease 6 [Arabidopsis thaliana]
Evalue: 4e-93 | Bitscore: 346
Identities = 205/500 (41%), Positives = 299/500 (59%), Gaps = 32/500 (6%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Ot10g01360 |
chrom10.0001 [213719..214924]
Evalue: 7e-11 | Bitscore: 63
Identities = 91/360 (25%), Positives = 144/360 (40%), Gaps = 59/360 (16%) |
Self |
Show Blast
|
| Ot04g02050 |
chrom04.0001 [301541..302729,302804..304869]
Evalue: 3e-08 | Bitscore: 55
Identities = 66/254 (25%), Positives = 103/254 (40%), Gaps = 42/254 (16%) |
Self |
Show Blast
|
| Ot11g00020 |
chrom11.0001 [3388..5454]
Evalue: 6e-07 | Bitscore: 50
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 7/66 (10%) |
Self |
Show Blast
|
| Ot04g04510 |
chrom04.0001 [684454..684480,684518..686440]
Evalue: 3e-06 | Bitscore: 48
Identities = 64/258 (24%), Positives = 103/258 (39%), Gaps = 62/258 (24%) |
Self |
Show Blast
|
| Ot01g01550 |
chrom01.0001 [228044..228293,228626..229940,229978..229993, 230036..230085,230127..230316,230384..232249]
Evalue: 6e-06 | Bitscore: 47
Identities = 57/209 (27%), Positives = 84/209 (40%), Gaps = 54/209 (25%) |
Self |
Show Blast
|
| Ot01g03000 |
chrom01.0001 [467503..467517,467759..468093,468128..468481,
Evalue: 4e-05 | Bitscore: 44
Identities = 40/131 (30%), Positives = 59/131 (45%), Gaps = 14/131 (10%) |
Self |
Show Blast
|
| Ot11g02170 |
chrom11.0001 [369884..371626]
Evalue: 9e-05 | Bitscore: 43
Identities = 68/290 (23%), Positives = 109/290 (37%), Gaps = 46/290 (15%) |
Self |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Q949Y0 |
Ubiquitin carboxyl-terminal hydrolase 6 OS=Arabidopsis thaliana GN=UBP6 PE=1 SV=1
Evalue: 7e-92 | Bitscore: 338
Identities = 204/498 (40%), Positives = 295/498 (59%), Gaps = 32/498 (6%) |
SwissP |
Show Blast
|
| Q84WC6 |
Ubiquitin carboxyl-terminal hydrolase 7 OS=Arabidopsis thaliana GN=UBP7 PE=1 SV=1
Evalue: 9e-89 | Bitscore: 327
Identities = 200/496 (40%), Positives = 290/496 (58%), Gaps = 37/496 (7%) |
SwissP |
Show Blast
|
| Q0IIF7 |
Ubiquitin carboxyl-terminal hydrolase 14 OS=Bos taurus GN=USP14 PE=2 SV=3
Evalue: 5e-73 | Bitscore: 275
Identities = 179/518 (34%), Positives = 258/518 (49%), Gaps = 63/518 (12%) |
SwissP |
Show Blast
|
| P60051 |
Ubiquitin carboxyl-terminal hydrolase 14 OS=Pan troglodytes GN=USP14 PE=3 SV=2
Evalue: 1e-72 | Bitscore: 274
Identities = 177/518 (34%), Positives = 258/518 (49%), Gaps = 63/518 (12%) |
SwissP |
Show Blast
|
| P54578 |
Ubiquitin carboxyl-terminal hydrolase 14 OS=Homo sapiens GN=USP14 PE=1 SV=3
Evalue: 1e-72 | Bitscore: 274
Identities = 177/518 (34%), Positives = 258/518 (49%), Gaps = 63/518 (12%) |
SwissP |
Show Blast
|
| P40826 |
Ubiquitin carboxyl-terminal hydrolase 14 OS=Oryctolagus cuniculus GN=USP14 PE=1 SV=3
Evalue: 1e-71 | Bitscore: 270
Identities = 176/517 (34%), Positives = 258/517 (49%), Gaps = 62/517 (11%) |
SwissP |
Show Blast
|
| Q9JMA1 |
Ubiquitin carboxyl-terminal hydrolase 14 OS=Mus musculus GN=Usp14 PE=1 SV=3
Evalue: 2e-71 | Bitscore: 270
Identities = 174/518 (33%), Positives = 258/518 (49%), Gaps = 64/518 (12%) |
SwissP |
Show Blast
|
| Q92353 |
Ubiquitin carboxyl-terminal hydrolase 6 OS=Schizosaccharomyces pombe GN=ubp6 PE=1 SV=1
Evalue: 5e-68 | Bitscore: 258
Identities = 173/492 (35%), Positives = 255/492 (51%), Gaps = 38/492 (7%) |
SwissP |
Show Blast
|
| Q17361 |
Ubiquitin carboxyl-terminal hydrolase 14 OS=Caenorhabditis elegans GN=usp-14 PE=2 SV=2
Evalue: 7e-56 | Bitscore: 218
Identities = 161/492 (32%), Positives = 236/492 (47%), Gaps = 44/492 (8%) |
SwissP |
Show Blast
|
| P43593 |
Ubiquitin carboxyl-terminal hydrolase 6 OS=Saccharomyces cerevisiae GN=UBP6 PE=1 SV=1
Evalue: 4e-47 | Bitscore: 189
Identities = 142/503 (28%), Positives = 238/503 (47%), Gaps = 41/503 (8%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT1G51710.1 |
| Symbols: UBP6 | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6); ubiquitin-specific protease | chr1:19179473-19183562
Evalue: 6e-93 | Bitscore: 338
Identities = 204/498 (40%), Positives = 295/498 (59%), Gaps = 32/498 (6%) |
Tair |
Show Blast
|
| AT3G21280.1 |
| Symbols: UBP7 | UBP7 (UBIQUITIN-SPECIFIC PROTEASE 7); ubiquitin-specific protease | chr3:7478172-7482043
Evalue: 3e-90 | Bitscore: 328
Identities = 200/495 (40%), Positives = 290/495 (58%), Gaps = 35/495 (7%) |
Tair |
Show Blast
|
| AT1G51710.2 |
| Symbols: UBP6 | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) | chr1:19179473-19183067 REVERSE
Evalue: 3e-86 | Bitscore: 315
Identities = 184/444 (41%), Positives = 264/444 (59%), Gaps = 27/444 (6%) |
Tair |
Show Blast
|
| AT4G39910.1 |
| Symbols: UBP3, ATUBP3 | ATUBP3 (UBIQUITIN-SPECIFIC PROTEASE 3); ubiquitin-specific protease | chr4:18511852-18514133
Evalue: 3e-12 | Bitscore: 70
Identities = 100/406 (24%), Positives = 151/406 (37%), Gaps = 80/406 (19%) |
Tair |
Show Blast
|
| AT2G22310.1 |
| Symbols: UBP4, ATUBP4 | ATUBP4 (UBIQUITIN-SPECIFIC PROTEASE 4); ubiquitin-specific protease | chr2:9483813-9485905
Evalue: 5e-10 | Bitscore: 62
Identities = 97/401 (24%), Positives = 148/401 (36%), Gaps = 75/401 (18%) |
Tair |
Show Blast
|
| AT4G30890.1 |
| Symbols: UBP24 | UBP24 (UBIQUITIN-SPECIFIC PROTEASE 24); ubiquitin-specific protease | chr4:15036389-15038831
Evalue: 1e-05 | Bitscore: 48
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 7/64 (10%) |
Tair |
Show Blast
|
| AT4G30890.2 |
| Symbols: UBP24 | UBP24 (UBIQUITIN-SPECIFIC PROTEASE 24); ubiquitin-specific protease | chr4:15036389-15038831
Evalue: 1e-05 | Bitscore: 48
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 7/64 (10%) |
Tair |
Show Blast
|
| AT4G39370.2 |
| Symbols: UBP27 | UBP27 (UBIQUITIN-SPECIFIC PROTEASE 27); ubiquitin-specific protease | chr4:18306386-18307925
Evalue: 2e-05 | Bitscore: 47
Identities = 43/133 (32%), Positives = 58/133 (43%), Gaps = 29/133 (21%) |
Tair |
Show Blast
|
| AT4G39370.1 |
| Symbols: UBP27 | UBP27 (UBIQUITIN-SPECIFIC PROTEASE 27); ubiquitin-specific protease | chr4:18306386-18308619
Evalue: 2e-05 | Bitscore: 47
Identities = 43/133 (32%), Positives = 58/133 (43%), Gaps = 29/133 (21%) |
Tair |
Show Blast
|
| AT5G57990.1 |
| Symbols: UBP23 | UBP23 (UBIQUITIN-SPECIFIC PROTEASE 23); ubiquitin-specific protease | chr5:23487444-23491223
Evalue: 4e-05 | Bitscore: 46
Identities = 20/51 (39%), Positives = 28/51 (54%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- +
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
View in GenomeView| View in Artemini
| EST ID | OtEST01489 |
Support Model | N |
More Info |
| Comment | EST is not matching the given gene model. EST is mapped on the opposite strand |
| Mapping Location | 66427..66451,307330..307850 |
Strand - |
|
