- Gene ID
- Ot15g01870
- Locus
- Ot15g01870
- Functional Description
- Translation initiation factor 3, subunit b (eIF-3b) (ISS)
- Gene Type
- protein-coding gene
- Contig
- chrom15
- Last Modified On
- 09 March 2010 12h45
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- Translation initiation factor 3, subunit b (eIF-3b) (ISS)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
n/a
- Molecular Function
-
1.
RNA binding
2.
translation initiation factor activity
- Biological Process
-
1.
translational initiation
Protein Domains
| Domain ID | Description | Database |
|---|
|
SSF54928 |
RNA-binding domain, RBD |
superfamily |
|
IPR000504 |
RNA recognition motif, RNP-1 |
InterPro |
|
IPR012677 |
Nucleotide-binding, alpha-beta plait |
InterPro |
|
PF08662 |
eIF2A |
HMMPfam |
|
IPR011400 |
Translation initiation factor eIF-3b |
InterPro |
|
SSF82171 |
Dipeptidyl peptidase IV/CD26, N-terminal domain |
superfamily |
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL57606.1 |
Translation initiation factor 3, subunit b (eIF-3b) (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 1447
Identities = 694/694 (100%), Positives = 694/694 (100%), Gaps = 0/694 (0%) |
NCBI |
Show Blast
|
| XP_001421305.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 1153
Identities = 541/635 (85%), Positives = 588/635 (92%), Gaps = 4/635 (0%) |
NCBI |
Show Blast
|
| XP_002505347.1 |
eukaryotic translation initiation factor-like protein [Micromonas sp. RCC299]
Evalue: 0.0 | Bitscore: 935
Identities = 439/648 (67%), Positives = 528/648 (81%), Gaps = 6/648 (0%) |
NCBI |
Show Blast
|
| EEH55037.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 0.0 | Bitscore: 877
Identities = 421/639 (65%), Positives = 506/639 (79%), Gaps = 18/639 (2%) |
NCBI |
Show Blast
|
| XP_001770820.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 0.0 | Bitscore: 731
Identities = 356/628 (56%), Positives = 461/628 (73%), Gaps = 23/628 (3%) |
NCBI |
Show Blast
|
| XP_001771510.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 0.0 | Bitscore: 727
Identities = 358/634 (56%), Positives = 462/634 (72%), Gaps = 29/634 (4%) |
NCBI |
Show Blast
|
| CAN76773.1 |
hypothetical protein [Vitis vinifera]
Evalue: 0.0 | Bitscore: 720
Identities = 341/627 (54%), Positives = 455/627 (72%), Gaps = 9/627 (1%) |
NCBI |
Show Blast
|
| XP_002285591.1 |
PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 0.0 | Bitscore: 719
Identities = 341/627 (54%), Positives = 455/627 (72%), Gaps = 9/627 (1%) |
NCBI |
Show Blast
|
| ABK25119.1 |
unknown [Picea sitchensis]
Evalue: 0.0 | Bitscore: 711
Identities = 347/642 (54%), Positives = 463/642 (72%), Gaps = 12/642 (1%) |
NCBI |
Show Blast
|
| XP_002308719.1 |
predicted protein [Populus trichocarpa]
Evalue: 0.0 | Bitscore: 711
Identities = 344/635 (54%), Positives = 457/635 (71%), Gaps = 11/635 (1%) |
NCBI |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAD72390.1 |
unknown [environmental sequence]
Evalue: 6e-40 | Bitscore: 165
Identities = 81/108 (75%), Positives = 97/108 (89%), Gaps = 1/108 (0%) |
GOS |
Show Blast
|
| EAC17667.1 |
unknown [environmental sequence]
Evalue: 4e-18 | Bitscore: 93
Identities = 59/168 (35%), Positives = 87/168 (51%), Gaps = 23/168 (13%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL57606.1 |
Translation initiation factor 3, subunit b (eIF-3b) (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 1447
Identities = 694/694 (100%), Positives = 694/694 (100%), Gaps = 0/694 (0%) |
NCBI |
Show Blast
|
| XP_001421305.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 1153
Identities = 541/635 (85%), Positives = 588/635 (92%), Gaps = 4/635 (0%) |
NCBI |
Show Blast
|
| XP_002505347.1 |
eukaryotic translation initiation factor-like protein [Micromonas sp. RCC299]
Evalue: 0.0 | Bitscore: 935
Identities = 439/648 (67%), Positives = 528/648 (81%), Gaps = 6/648 (0%) |
NCBI |
Show Blast
|
| EEH55037.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 0.0 | Bitscore: 877
Identities = 421/639 (65%), Positives = 506/639 (79%), Gaps = 18/639 (2%) |
NCBI |
Show Blast
|
| XP_001770820.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 0.0 | Bitscore: 731
Identities = 356/628 (56%), Positives = 461/628 (73%), Gaps = 23/628 (3%) |
NCBI |
Show Blast
|
| XP_001771510.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 0.0 | Bitscore: 727
Identities = 358/634 (56%), Positives = 462/634 (72%), Gaps = 29/634 (4%) |
NCBI |
Show Blast
|
| CAN76773.1 |
hypothetical protein [Vitis vinifera]
Evalue: 0.0 | Bitscore: 720
Identities = 341/627 (54%), Positives = 455/627 (72%), Gaps = 9/627 (1%) |
NCBI |
Show Blast
|
| XP_002285591.1 |
PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 0.0 | Bitscore: 719
Identities = 341/627 (54%), Positives = 455/627 (72%), Gaps = 9/627 (1%) |
NCBI |
Show Blast
|
| ABK25119.1 |
unknown [Picea sitchensis]
Evalue: 0.0 | Bitscore: 711
Identities = 347/642 (54%), Positives = 463/642 (72%), Gaps = 12/642 (1%) |
NCBI |
Show Blast
|
| XP_002308719.1 |
predicted protein [Populus trichocarpa]
Evalue: 0.0 | Bitscore: 711
Identities = 344/635 (54%), Positives = 457/635 (71%), Gaps = 11/635 (1%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Ot07g00080 |
chrom07.0001 [12550..14268]
Evalue: 2e-12 | Bitscore: 69
Identities = 87/403 (21%), Positives = 152/403 (37%), Gaps = 50/403 (12%) |
Self |
Show Blast
|
| Ot07g03680 |
chrom07.0001 [592872..592900,592966..593271,593304..594483]
Evalue: 4e-05 | Bitscore: 45
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%) |
Self |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Q9C5Z1 |
Eukaryotic translation initiation factor 3 subunit B OS=Arabidopsis thaliana GN=TIF3B1 PE=1 SV=1
Evalue: 0.0 | Bitscore: 676
Identities = 326/636 (51%), Positives = 453/636 (71%), Gaps = 12/636 (1%) |
SwissP |
Show Blast
|
| P56821 |
Eukaryotic translation initiation factor 3 subunit B OS=Nicotiana tabacum GN=TIF3B1 PE=2 SV=1
Evalue: 1e-180 | Bitscore: 630
Identities = 319/629 (50%), Positives = 435/629 (69%), Gaps = 12/629 (1%) |
SwissP |
Show Blast
|
| P55884 |
Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B PE=1 SV=3
Evalue: 1e-140 | Bitscore: 498
Identities = 271/625 (43%), Positives = 376/625 (60%), Gaps = 49/625 (7%) |
SwissP |
Show Blast
|
| A7MB16 |
Eukaryotic translation initiation factor 3 subunit B OS=Bos taurus GN=EIF3B PE=2 SV=1
Evalue: 1e-139 | Bitscore: 497
Identities = 269/625 (43%), Positives = 376/625 (60%), Gaps = 49/625 (7%) |
SwissP |
Show Blast
|
| Q569Z1 |
Eukaryotic translation initiation factor 3 subunit B OS=Xenopus laevis GN=eif3b PE=2 SV=1
Evalue: 1e-138 | Bitscore: 493
Identities = 268/625 (42%), Positives = 377/625 (60%), Gaps = 49/625 (7%) |
SwissP |
Show Blast
|
| Q8JZQ9 |
Eukaryotic translation initiation factor 3 subunit B OS=Mus musculus GN=Eif3b PE=1 SV=1
Evalue: 1e-138 | Bitscore: 493
Identities = 269/625 (43%), Positives = 375/625 (60%), Gaps = 49/625 (7%) |
SwissP |
Show Blast
|
| Q4G061 |
Eukaryotic translation initiation factor 3 subunit B OS=Rattus norvegicus GN=Eif3b PE=1 SV=1
Evalue: 1e-138 | Bitscore: 493
Identities = 269/625 (43%), Positives = 375/625 (60%), Gaps = 49/625 (7%) |
SwissP |
Show Blast
|
| Q5BGH1 |
Eukaryotic translation initiation factor 3 subunit B OS=Emericella nidulans GN=prt1 PE=3 SV=1
Evalue: 1e-122 | Bitscore: 437
Identities = 252/639 (39%), Positives = 381/639 (59%), Gaps = 64/639 (10%) |
SwissP |
Show Blast
|
| A2Q908 |
Eukaryotic translation initiation factor 3 subunit B OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=prt1 PE=3 SV=1
Evalue: 1e-120 | Bitscore: 432
Identities = 252/659 (38%), Positives = 379/659 (57%), Gaps = 67/659 (10%) |
SwissP |
Show Blast
|
| Q1HDZ5 |
Eukaryotic translation initiation factor 3 subunit B OS=Bombyx mori GN=eIF3-S9 PE=2 SV=1
Evalue: 1e-120 | Bitscore: 431
Identities = 245/622 (39%), Positives = 358/622 (57%), Gaps = 51/622 (8%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT5G25780.1 |
| Symbols: ATEIF3B-2, EIF3B-2 | EIF3B-2 (eukaryotic translation initiation factor 3B-2); nucleic acid binding /
Evalue: 0.0 | Bitscore: 686
Identities = 327/643 (50%), Positives = 459/643 (71%), Gaps = 21/643 (3%) |
Tair |
Show Blast
|
| AT5G27640.1 |
| Symbols: EIF3B, ATEIF3B-1, EIF3B-1, ATTIF3B1, TIF3B1 | TIF3B1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B); nucleic
Evalue: 0.0 | Bitscore: 676
Identities = 326/636 (51%), Positives = 453/636 (71%), Gaps = 12/636 (1%) |
Tair |
Show Blast
|
| AT5G27640.2 |
| Symbols: EIF3B, ATEIF3B-1, EIF3B-1, ATTIF3B1, TIF3B1 | TIF3B1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B); nucleic
Evalue: 0.0 | Bitscore: 664
Identities = 326/662 (49%), Positives = 453/662 (68%), Gaps = 38/662 (5%) |
Tair |
Show Blast
|
| AT1G49015.1 |
| Symbols: | eukaryotic translation initiation factor-related | chr1:18138196-18138980 FORWARD
Evalue: 2e-36 | Bitscore: 150
Identities = 84/219 (38%), Positives = 120/219 (54%), Gaps = 23/219 (10%) |
Tair |
Show Blast
|
| AT1G73180.1 |
| Symbols: | eukaryotic translation initiation factor-related | chr1:27521996-27525093 FORWARD
Evalue: 5e-22 | Bitscore: 103
Identities = 104/443 (23%), Positives = 174/443 (39%), Gaps = 48/443 (10%) |
Tair |
Show Blast
|
| AT1G73180.2 |
| Symbols: | eukaryotic translation initiation factor-related | chr1:27521996-27524675 FORWARD
Evalue: 8e-22 | Bitscore: 102
Identities = 104/443 (23%), Positives = 174/443 (39%), Gaps = 48/443 (10%) |
Tair |
Show Blast
|
| AT1G22760.1 |
| Symbols: PAB3 | PAB3 (POLY(A) BINDING PROTEIN 3); RNA binding | chr1:8055588-8058788 FORWARD
Evalue: 0.0002 | Bitscore: 44
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 5/80 (6%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- +
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
- n/a
-
|
