- Gene ID
- Ot13g01160
- Locus
- Ot13g01160
- Functional Description
- Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit (ISS)
- Gene Type
- protein-coding gene
- Contig
- chrom13
- Last Modified On
- 09 March 2010 10h48
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit (ISS)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
n/a
- Molecular Function
-
1.
nucleic acid binding
- Biological Process
-
n/a
Protein Domains
| Domain ID | Description | Database |
|---|
|
IPR011991 |
Winged helix-turn-helix transcription repressor DNA-binding |
InterPro |
|
SSF46785 |
SSF46785 |
superfamily |
|
IPR012340 |
Nucleic acid-binding, OB-fold |
InterPro |
|
IPR016027 |
Nucleic acid-binding, OB-fold-like |
InterPro |
|
IPR014892 |
Replication protein A, C-terminal |
InterPro |
|
IPR004365 |
Nucleic acid binding, OB-fold, tRNA/helicase-type |
InterPro |
|
PTHR13989 |
PTHR13989 |
HMMPanther |
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL56444.1 |
Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit (ISS) [Ostreococcus tauri]
Evalue: 2e-149 | Bitscore: 531
Identities = 262/262 (100%), Positives = 262/262 (100%), Gaps = 0/262 (0%) |
NCBI |
Show Blast
|
| XP_001420928.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 2e-59 | Bitscore: 233
Identities = 117/231 (50%), Positives = 163/231 (70%), Gaps = 6/231 (2%) |
NCBI |
Show Blast
|
| Ol13g01080 |
+
Evalue: 9e-60 | Bitscore: 224
Identities = 128/260 (49%), Positives = 179/260 (68%), Gaps = 7/260 (2%) |
O.luci |
Show Blast
|
| XP_002502941.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 3e-34 | Bitscore: 149
Identities = 91/238 (38%), Positives = 142/238 (59%), Gaps = 16/238 (6%) |
NCBI |
Show Blast
|
| XP_003058814.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 9e-40 | Bitscore: 145
Identities = 102/277 (37%), Positives = 155/277 (56%), Gaps = 21/277 (8%) |
NCBI |
Show Blast
|
| EEH57269.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 3e-33 | Bitscore: 145
Identities = 102/277 (36%), Positives = 155/277 (55%), Gaps = 21/277 (7%) |
NCBI |
Show Blast
|
| XP_002981721.1 |
hypothetical protein SELMODRAFT_421246 [Selaginella moellendorffii]
Evalue: 5e-33 | Bitscore: 128
Identities = 89/286 (31%), Positives = 149/286 (52%), Gaps = 36/286 (13%) |
NCBI |
Show Blast
|
| XP_002967805.1 |
hypothetical protein SELMODRAFT_440021 [Selaginella moellendorffii]
Evalue: 2e-32 | Bitscore: 127
Identities = 88/286 (31%), Positives = 149/286 (52%), Gaps = 36/286 (13%) |
NCBI |
Show Blast
|
| XP_001783243.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 7e-27 | Bitscore: 124
Identities = 96/288 (33%), Positives = 150/288 (52%), Gaps = 41/288 (14%) |
NCBI |
Show Blast
|
| ADE75749.1 |
unknown [Picea sitchensis]
Evalue: 2e-27 | Bitscore: 114
Identities = 73/241 (30%), Positives = 129/241 (54%), Gaps = 23/241 (10%) |
NCBI |
Show Blast
|
| No hits found against database GOS with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL56444.1 |
Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit (ISS) [Ostreococcus tauri]
Evalue: 2e-149 | Bitscore: 531
Identities = 262/262 (100%), Positives = 262/262 (100%), Gaps = 0/262 (0%) |
NCBI |
Show Blast
|
| XP_001420928.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 4e-74 | Bitscore: 233
Identities = 117/231 (51%), Positives = 163/231 (71%), Gaps = 6/231 (3%) |
NCBI |
Show Blast
|
| XP_001420928.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 2e-59 | Bitscore: 233
Identities = 117/231 (50%), Positives = 163/231 (70%), Gaps = 6/231 (2%) |
NCBI |
Show Blast
|
| XP_002502941.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 2e-41 | Bitscore: 149
Identities = 91/238 (38%), Positives = 142/238 (60%), Gaps = 16/238 (7%) |
NCBI |
Show Blast
|
| XP_002502941.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 3e-34 | Bitscore: 149
Identities = 91/238 (38%), Positives = 142/238 (59%), Gaps = 16/238 (6%) |
NCBI |
Show Blast
|
| XP_003058814.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 9e-40 | Bitscore: 145
Identities = 102/277 (37%), Positives = 155/277 (56%), Gaps = 21/277 (8%) |
NCBI |
Show Blast
|
| EEH57269.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 3e-33 | Bitscore: 145
Identities = 102/277 (36%), Positives = 155/277 (55%), Gaps = 21/277 (7%) |
NCBI |
Show Blast
|
| XP_002981721.1 |
hypothetical protein SELMODRAFT_421246 [Selaginella moellendorffii]
Evalue: 5e-33 | Bitscore: 128
Identities = 89/286 (31%), Positives = 149/286 (52%), Gaps = 36/286 (13%) |
NCBI |
Show Blast
|
| XP_002967805.1 |
hypothetical protein SELMODRAFT_440021 [Selaginella moellendorffii]
Evalue: 2e-32 | Bitscore: 127
Identities = 88/286 (31%), Positives = 149/286 (52%), Gaps = 36/286 (13%) |
NCBI |
Show Blast
|
| XP_001783243.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 1e-31 | Bitscore: 124
Identities = 96/288 (33%), Positives = 150/288 (52%), Gaps = 41/288 (14%) |
NCBI |
Show Blast
|
| XP_001783243.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 7e-27 | Bitscore: 124
Identities = 96/288 (33%), Positives = 150/288 (52%), Gaps = 41/288 (14%) |
NCBI |
Show Blast
|
| ADE75749.1 |
unknown [Picea sitchensis]
Evalue: 2e-27 | Bitscore: 114
Identities = 73/241 (30%), Positives = 129/241 (54%), Gaps = 23/241 (10%) |
NCBI |
Show Blast
|
| XP_002836860.1 |
hypothetical protein [Tuber melanosporum Mel28]
Evalue: 2e-25 | Bitscore: 109
Identities = 74/247 (30%), Positives = 116/247 (47%), Gaps = 39/247 (16%) |
NCBI |
Show Blast
|
| XP_776149.1 |
hypothetical protein CNBD1960 [Cryptococcus neoformans var. neoformans B-3501A]
Evalue: 1e-25 | Bitscore: 108
Identities = 85/259 (33%), Positives = 129/259 (50%), Gaps = 50/259 (19%) |
NCBI |
Show Blast
|
| XP_776149.1 |
hypothetical protein CNBD1960 [Cryptococcus neoformans var. neoformans B-3501A]
Evalue: 6e-22 | Bitscore: 108
Identities = 85/259 (32%), Positives = 129/259 (49%), Gaps = 50/259 (19%) |
NCBI |
Show Blast
|
| EFN58502.1 |
hypothetical protein CHLNCDRAFT_140549 [Chlorella variabilis]
Evalue: 4e-25 | Bitscore: 107
Identities = 75/251 (30%), Positives = 118/251 (47%), Gaps = 28/251 (11%) |
NCBI |
Show Blast
|
| EEY53901.1 |
replication protein A 32 kDa subunit, putative [Phytophthora infestans T30-4]
Evalue: 5e-21 | Bitscore: 105
Identities = 76/261 (29%), Positives = 130/261 (49%), Gaps = 27/261 (10%) |
NCBI |
Show Blast
|
| EEU40862.1 |
hypothetical protein NECHADRAFT_103427 [Nectria haematococca mpVI 77-13-4]
Evalue: 4e-20 | Bitscore: 102
Identities = 73/235 (31%), Positives = 118/235 (50%), Gaps = 17/235 (7%) |
NCBI |
Show Blast
|
| ACQ58571.1 |
Replication protein A 32 kDa subunit [Anoplopoma fimbria]
Evalue: 5e-19 | Bitscore: 99
Identities = 72/244 (29%), Positives = 129/244 (52%), Gaps = 22/244 (9%) |
NCBI |
Show Blast
|
| XP_389900.1 |
hypothetical protein FG09724.1 [Gibberella zeae PH-1]
Evalue: 2e-18 | Bitscore: 97
Identities = 68/237 (28%), Positives = 110/237 (46%), Gaps = 18/237 (7%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Ol13g01080 |
+
Evalue: 9e-60 | Bitscore: 224
Identities = 128/260 (49%), Positives = 179/260 (68%), Gaps = 7/260 (2%) |
O.luci |
Show Blast
|
| No hits found against database Self with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Q92373 |
Replication factor A protein 2 OS=Schizosaccharomyces pombe GN=ssb2 PE=1 SV=1
Evalue: 2e-16 | Bitscore: 86
Identities = 69/239 (28%), Positives = 115/239 (48%), Gaps = 23/239 (9%) |
SwissP |
Show Blast
|
| Q92373 |
Replication factor A protein 2 OS=Schizosaccharomyces pombe (strain ATCC 38366 / 972) GN=ssb2 PE=1 SV=1
Evalue: 2e-16 | Bitscore: 86
Identities = 69/239 (28%), Positives = 115/239 (48%), Gaps = 23/239 (9%) |
SwissP |
Show Blast
|
| Q5RC43 |
Replication protein A 32 kDa subunit OS=Pongo abelii GN=RPA2 PE=2 SV=1
Evalue: 9e-14 | Bitscore: 77
Identities = 71/257 (27%), Positives = 127/257 (49%), Gaps = 21/257 (8%) |
SwissP |
Show Blast
|
| Q5RC43 |
Replication protein A 32 kDa subunit OS=Pongo abelii GN=RPA2 PE=2 SV=1
Evalue: 9e-14 | Bitscore: 77
Identities = 71/257 (27%), Positives = 127/257 (49%), Gaps = 21/257 (8%) |
SwissP |
Show Blast
|
| P15927 |
Replication protein A 32 kDa subunit OS=Homo sapiens GN=RPA2 PE=1 SV=1
Evalue: 2e-13 | Bitscore: 76
Identities = 70/257 (27%), Positives = 127/257 (49%), Gaps = 21/257 (8%) |
SwissP |
Show Blast
|
| P15927 |
Replication protein A 32 kDa subunit OS=Homo sapiens GN=RPA2 PE=1 SV=1
Evalue: 2e-13 | Bitscore: 76
Identities = 70/257 (27%), Positives = 127/257 (49%), Gaps = 21/257 (8%) |
SwissP |
Show Blast
|
| Q63528 |
Replication protein A 32 kDa subunit OS=Rattus norvegicus GN=Rpa2 PE=2 SV=2
Evalue: 4e-12 | Bitscore: 72
Identities = 65/270 (24%), Positives = 127/270 (47%), Gaps = 33/270 (12%) |
SwissP |
Show Blast
|
| Q63528 |
Replication protein A 32 kDa subunit OS=Rattus norvegicus GN=Rpa2 PE=2 SV=2
Evalue: 4e-12 | Bitscore: 72
Identities = 65/270 (24%), Positives = 127/270 (47%), Gaps = 33/270 (12%) |
SwissP |
Show Blast
|
| Q62193 |
Replication protein A 32 kDa subunit OS=Mus musculus GN=Rpa2 PE=1 SV=1
Evalue: 2e-11 | Bitscore: 69
Identities = 60/264 (22%), Positives = 122/264 (46%), Gaps = 15/264 (5%) |
SwissP |
Show Blast
|
| Q23697 |
Replication protein A 28 kDa subunit OS=Crithidia fasciculata GN=RPA2 PE=3 SV=1
Evalue: 2e-11 | Bitscore: 69
Identities = 66/232 (28%), Positives = 111/232 (47%), Gaps = 23/232 (9%) |
SwissP |
Show Blast
|
| Q62193 |
Replication protein A 32 kDa subunit OS=Mus musculus GN=Rpa2 PE=1 SV=1
Evalue: 2e-11 | Bitscore: 69
Identities = 60/264 (22%), Positives = 122/264 (46%), Gaps = 15/264 (5%) |
SwissP |
Show Blast
|
| Q23697 |
Replication protein A 28 kDa subunit OS=Crithidia fasciculata GN=RPA2 PE=3 SV=1
Evalue: 2e-11 | Bitscore: 69
Identities = 66/232 (28%), Positives = 111/232 (47%), Gaps = 23/232 (9%) |
SwissP |
Show Blast
|
| Q13156 |
Replication protein A 30 kDa subunit OS=Homo sapiens GN=RPA4 PE=1 SV=2
Evalue: 5e-09 | Bitscore: 61
Identities = 52/211 (24%), Positives = 98/211 (46%), Gaps = 18/211 (8%) |
SwissP |
Show Blast
|
| Q13156 |
Replication protein A 30 kDa subunit OS=Homo sapiens GN=RPA4 PE=1 SV=2
Evalue: 6e-09 | Bitscore: 61
Identities = 52/211 (24%), Positives = 98/211 (46%), Gaps = 18/211 (8%) |
SwissP |
Show Blast
|
| P26754 |
Replication factor A protein 2 OS=Saccharomyces cerevisiae GN=RFA2 PE=1 SV=1
Evalue: 1e-06 | Bitscore: 53
Identities = 64/252 (25%), Positives = 105/252 (41%), Gaps = 40/252 (15%) |
SwissP |
Show Blast
|
| P26754 |
Replication factor A protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RFA2 PE=1 SV=1
Evalue: 2e-06 | Bitscore: 53
Identities = 64/252 (25%), Positives = 105/252 (41%), Gaps = 40/252 (15%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT2G24490.2 |
| Symbols: RPA2, ATRPA2, ROR1 | ATRPA2/ROR1/RPA2 (REPLICON PROTEIN A) | chr2:10405731-10407496 REVERSE
Evalue: 2e-18 | Bitscore: 89
Identities = 79/284 (27%), Positives = 134/284 (47%), Gaps = 36/284 (12%) |
Tair |
Show Blast
|
| AT2G24490.1 |
| Symbols: RPA2, ATRPA2, ROR1 | ATRPA2/ROR1/RPA2 (REPLICON PROTEIN A); protein binding | chr2:10405731-10407496 REVERSE
Evalue: 2e-18 | Bitscore: 89
Identities = 79/284 (27%), Positives = 134/284 (47%), Gaps = 36/284 (12%) |
Tair |
Show Blast
|
| AT2G24490.2 |
| Symbols: RPA2, ATRPA2, ROR1, ATRPA32A, RPA32A | replicon protein A2 | chr2:10398651-10400416 REVERSE LENGTH=840 280
Evalue: 2e-18 | Bitscore: 89
Identities = 79/284 (27%), Positives = 134/284 (47%), Gaps = 36/284 (12%) |
Tair |
Show Blast
|
| AT2G24490.1 |
| Symbols: RPA2, ATRPA2, ROR1, ATRPA32A, RPA32A | replicon protein A2 | chr2:10398651-10400416 REVERSE LENGTH=840 280
Evalue: 2e-18 | Bitscore: 89
Identities = 79/284 (27%), Positives = 134/284 (47%), Gaps = 36/284 (12%) |
Tair |
Show Blast
|
| AT3G02920.1 |
| Symbols: | replication protein-related | chr3:651851-654196 REVERSE
Evalue: 3e-18 | Bitscore: 88
Identities = 76/285 (26%), Positives = 130/285 (45%), Gaps = 35/285 (12%) |
Tair |
Show Blast
|
| AT3G02920.1 |
| Symbols: RPA32B, ATRPA32B | Replication protein A, subunit RPA32 | chr3:651844-654189 REVERSE LENGTH=837 279
Evalue: 4e-18 | Bitscore: 88
Identities = 76/285 (26%), Positives = 130/285 (45%), Gaps = 35/285 (12%) |
Tair |
Show Blast
|
| AT3G02920.2 |
| Symbols: RPA32B | Replication protein A, subunit RPA32 | chr3:651844-654189 REVERSE LENGTH=897 299
Evalue: 1e-16 | Bitscore: 83
Identities = 64/243 (26%), Positives = 113/243 (46%), Gaps = 26/243 (10%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- +
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
- n/a
-
|
