- Gene ID
- Ot12g01070
- Locus
- Ot12g01070
- Functional Description
- S59591 histone H2B (ISS)
- Gene Type
- protein-coding gene
- Contig
- chrom12
- Last Modified On
- 09 March 2010 9h54
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- S59591 histone H2B (ISS)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
n/a
- Molecular Function
-
1.
DNA binding
- Biological Process
-
n/a
Protein Domains
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL57198.1 |
histone H2B (ISS) [Ostreococcus tauri]
Evalue: 9e-75 | Bitscore: 282
Identities = 138/138 (100%), Positives = 138/138 (100%), Gaps = 0/138 (0%) |
NCBI |
Show Blast
|
| CAL54927.1 |
histone H2B (ISS) [Ostreococcus tauri]
Evalue: 3e-56 | Bitscore: 220
Identities = 109/110 (99%), Positives = 110/110 (100%), Gaps = 0/110 (0%) |
NCBI |
Show Blast
|
| XP_001419128.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 5e-55 | Bitscore: 216
Identities = 107/112 (95%), Positives = 110/112 (98%), Gaps = 0/112 (0%) |
NCBI |
Show Blast
|
| XP_002503973.1 |
histone H2B [Micromonas sp. RCC299]
Evalue: 7e-49 | Bitscore: 196
Identities = 98/110 (89%), Positives = 103/110 (93%), Gaps = 0/110 (0%) |
NCBI |
Show Blast
|
| XP_002501781.1 |
histone H2B [Micromonas sp. RCC299]
Evalue: 9e-46 | Bitscore: 186
Identities = 96/110 (87%), Positives = 102/110 (92%), Gaps = 0/110 (0%) |
NCBI |
Show Blast
|
| EEH53747.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 1e-45 | Bitscore: 185
Identities = 102/111 (91%), Positives = 107/111 (96%), Gaps = 0/111 (0%) |
NCBI |
Show Blast
|
| XP_001693071.1 |
histone H2B [Chlamydomonas reinhardtii]
Evalue: 1e-43 | Bitscore: 179
Identities = 85/93 (91%), Positives = 90/93 (96%), Gaps = 0/93 (0%) |
NCBI |
Show Blast
|
| XP_001692948.1 |
histone H2B [Chlamydomonas reinhardtii]
Evalue: 1e-43 | Bitscore: 179
Identities = 85/93 (91%), Positives = 90/93 (96%), Gaps = 0/93 (0%) |
NCBI |
Show Blast
|
| Ot08g01890 |
chrom08.0001 [323784..323806,324099..324453]
Evalue: 3e-46 | Bitscore: 178
Identities = 109/110 (99%), Positives = 110/110 (100%) |
Self |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAD57116.1 |
unknown [environmental sequence]
Evalue: 2e-37 | Bitscore: 154
Identities = 98/110 (89%), Positives = 103/110 (93%) |
GOS |
Show Blast
|
| EAC87389.1 |
unknown [environmental sequence]
Evalue: 1e-32 | Bitscore: 137
Identities = 75/90 (83%), Positives = 86/90 (95%) |
GOS |
Show Blast
|
| EAH72326.1 |
unknown [environmental sequence]
Evalue: 1e-18 | Bitscore: 91
Identities = 47/78 (60%), Positives = 64/78 (82%) |
GOS |
Show Blast
|
| EAE33077.1 |
unknown [environmental sequence]
Evalue: 3e-09 | Bitscore: 60
Identities = 36/42 (85%), Positives = 39/42 (92%) |
GOS |
Show Blast
|
| EAF95464.1 |
unknown [environmental sequence]
Evalue: 3e-06 | Bitscore: 50
Identities = 27/95 (28%), Positives = 56/95 (58%), Gaps = 1/95 (1%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL57198.1 |
histone H2B (ISS) [Ostreococcus tauri]
Evalue: 9e-75 | Bitscore: 282
Identities = 138/138 (100%), Positives = 138/138 (100%), Gaps = 0/138 (0%) |
NCBI |
Show Blast
|
| CAL54927.1 |
histone H2B (ISS) [Ostreococcus tauri]
Evalue: 3e-56 | Bitscore: 220
Identities = 109/110 (99%), Positives = 110/110 (100%), Gaps = 0/110 (0%) |
NCBI |
Show Blast
|
| XP_001419128.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 5e-55 | Bitscore: 216
Identities = 107/112 (95%), Positives = 110/112 (98%), Gaps = 0/112 (0%) |
NCBI |
Show Blast
|
| XP_002503973.1 |
histone H2B [Micromonas sp. RCC299]
Evalue: 7e-49 | Bitscore: 196
Identities = 98/110 (89%), Positives = 103/110 (93%), Gaps = 0/110 (0%) |
NCBI |
Show Blast
|
| XP_002501781.1 |
histone H2B [Micromonas sp. RCC299]
Evalue: 9e-46 | Bitscore: 186
Identities = 96/110 (87%), Positives = 102/110 (92%), Gaps = 0/110 (0%) |
NCBI |
Show Blast
|
| EEH53747.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 1e-45 | Bitscore: 185
Identities = 102/111 (91%), Positives = 107/111 (96%), Gaps = 0/111 (0%) |
NCBI |
Show Blast
|
| P16867 |
RecName: Full=Histone H2B.3; AltName: Full=H2B-III
Evalue: 8e-44 | Bitscore: 179
Identities = 85/90 (94%), Positives = 90/90 (100%), Gaps = 0/90 (0%) |
NCBI |
Show Blast
|
| XP_001693071.1 |
histone H2B [Chlamydomonas reinhardtii]
Evalue: 1e-43 | Bitscore: 179
Identities = 85/93 (91%), Positives = 90/93 (96%), Gaps = 0/93 (0%) |
NCBI |
Show Blast
|
| XP_001692948.1 |
histone H2B [Chlamydomonas reinhardtii]
Evalue: 1e-43 | Bitscore: 179
Identities = 85/93 (91%), Positives = 90/93 (96%), Gaps = 0/93 (0%) |
NCBI |
Show Blast
|
| P50565 |
RecName: Full=Histone H2B.1; AltName: Full=H2B-I
Evalue: 1e-43 | Bitscore: 178
Identities = 85/93 (91%), Positives = 90/93 (96%), Gaps = 0/93 (0%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Ot08g01890 |
chrom08.0001 [323784..323806,324099..324453]
Evalue: 3e-46 | Bitscore: 178
Identities = 109/110 (99%), Positives = 110/110 (100%) |
Self |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Q943L2 |
Histone H2B.11 OS=Oryza sativa subsp. japonica GN=H2B.11 PE=3 SV=1
Evalue: 9e-36 | Bitscore: 148
Identities = 81/90 (90%), Positives = 88/90 (97%) |
SwissP |
Show Blast
|
| A2WWU2 |
Histone H2B.11 OS=Oryza sativa subsp. indica GN=H2B.11 PE=3 SV=1
Evalue: 9e-36 | Bitscore: 148
Identities = 81/90 (90%), Positives = 88/90 (97%) |
SwissP |
Show Blast
|
| P54346 |
Histone H2B.3 OS=Chlamydomonas reinhardtii PE=1 SV=3
Evalue: 2e-35 | Bitscore: 147
Identities = 85/93 (91%), Positives = 90/93 (96%) |
SwissP |
Show Blast
|
| P54347 |
Histone H2B.4 OS=Chlamydomonas reinhardtii PE=1 SV=3
Evalue: 3e-35 | Bitscore: 147
Identities = 85/93 (91%), Positives = 90/93 (96%) |
SwissP |
Show Blast
|
| P16868 |
Histone H2B.4 OS=Volvox carteri PE=3 SV=3
Evalue: 5e-35 | Bitscore: 145
Identities = 85/91 (93%), Positives = 91/91 (100%) |
SwissP |
Show Blast
|
| P16867 |
Histone H2B.3 OS=Volvox carteri PE=3 SV=3
Evalue: 6e-35 | Bitscore: 145
Identities = 85/90 (94%), Positives = 90/90 (100%) |
SwissP |
Show Blast
|
| P54345 |
Histone H2B.2 OS=Chlamydomonas reinhardtii PE=1 SV=3
Evalue: 2e-34 | Bitscore: 144
Identities = 85/93 (91%), Positives = 90/93 (96%) |
SwissP |
Show Blast
|
| Q43217 |
Histone H2B.3 OS=Triticum aestivum PE=1 SV=3
Evalue: 2e-34 | Bitscore: 143
Identities = 82/90 (91%), Positives = 88/90 (97%) |
SwissP |
Show Blast
|
| P50565 |
Histone H2B.1 OS=Chlamydomonas reinhardtii GN=H2B PE=1 SV=3
Evalue: 2e-34 | Bitscore: 143
Identities = 85/93 (91%), Positives = 90/93 (96%) |
SwissP |
Show Blast
|
| Q9LZT0 |
Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030 PE=1 SV=3
Evalue: 4e-34 | Bitscore: 143
Identities = 87/123 (70%), Positives = 100/123 (81%), Gaps = 13/123 (10%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT3G46030.1 |
| Symbols: HTB11 | HTB11; DNA binding | chr3:16924599-16925036 REVERSE
Evalue: 4e-35 | Bitscore: 143
Identities = 87/123 (70%), Positives = 100/123 (81%), Gaps = 13/123 (10%) |
Tair |
Show Blast
|
| AT5G59910.1 |
| Symbols: HTB4 | HTB4; DNA binding | chr5:24144432-24144884 FORWARD
Evalue: 7e-35 | Bitscore: 142
Identities = 88/123 (71%), Positives = 99/123 (80%), Gaps = 13/123 (10%) |
Tair |
Show Blast
|
| AT5G22880.1 |
| Symbols: H2B, HTB2 | H2B/HTB2 (HISTONE H2B); DNA binding | chr5:7652133-7652570 REVERSE
Evalue: 1e-34 | Bitscore: 141
Identities = 87/108 (80%), Positives = 96/108 (88%), Gaps = 3/108 (2%) |
Tair |
Show Blast
|
| AT2G28720.1 |
| Symbols: | histone H2B, putative | chr2:12334120-12334575 FORWARD
Evalue: 2e-33 | Bitscore: 137
Identities = 89/124 (71%), Positives = 100/124 (80%), Gaps = 14/124 (11%) |
Tair |
Show Blast
|
| AT1G07790.1 |
| Symbols: HTB1 | HTB1; DNA binding | chr1:2413046-2413492 FORWARD
Evalue: 3e-33 | Bitscore: 136
Identities = 88/121 (72%), Positives = 97/121 (80%), Gaps = 11/121 (9%) |
Tair |
Show Blast
|
| AT2G37470.1 |
| Symbols: | histone H2B, putative | chr2:15743910-15744326 FORWARD
Evalue: 3e-33 | Bitscore: 136
Identities = 85/121 (70%), Positives = 95/121 (78%), Gaps = 12/121 (9%) |
Tair |
Show Blast
|
| AT3G45980.1 |
| Symbols: HTB9 | HTB9; DNA binding | chr3:16908477-16908929 REVERSE
Evalue: 4e-33 | Bitscore: 136
Identities = 87/123 (70%), Positives = 100/123 (81%), Gaps = 13/123 (10%) |
Tair |
Show Blast
|
| AT3G53650.1 |
| Symbols: | histone H2B, putative | chr3:19900336-19900752 FORWARD
Evalue: 2e-32 | Bitscore: 134
Identities = 84/121 (69%), Positives = 95/121 (78%), Gaps = 11/121 (9%) |
Tair |
Show Blast
|
| AT3G09480.1 |
| Symbols: | histone H2B, putative | chr3:2914896-2915276 REVERSE
Evalue: 9e-32 | Bitscore: 132
Identities = 83/120 (69%), Positives = 97/120 (80%), Gaps = 10/120 (8%) |
Tair |
Show Blast
|
| AT5G02570.1 |
| Symbols: | histone H2B, putative | chr5:576740-577138 REVERSE
Evalue: 2e-31 | Bitscore: 131
Identities = 89/126 (70%), Positives = 101/126 (80%), Gaps = 16/126 (12%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- +
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
- n/a
-
|
