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Ostreococcus tauri


Gene ID
Ot12g00160
Locus
Ot12g00160
Functional Description
Predicted steroid reductase (ISS)
Gene Type
protein-coding gene
Contig
chrom12
Last Modified On
09 March 2010 9h41
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
Predicted steroid reductase (ISS)
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
1.
cytoplasm

2.
integral component of membrane

Molecular Function
1.
oxidoreductase activity, acting on the CH-CH group of donors

Biological Process
1.
lipid metabolic process

Protein Domains 


Domain IDDescriptionDatabase
PTHR14624 DFG10 PROTEIN HMMPanther
IPR001104 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
CAL57115.1 Predicted steroid reductase (ISS) [Ostreococcus tauri]
Evalue: 2e-94 | Bitscore: 350
Identities = 313/313 (100%), Positives = 313/313 (100%), Gaps = 0/313 (0%)		 NCBI
Show Blast
XP_001420731.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 6e-29 | Bitscore: 132
Identities = 125/271 (46%), Positives = 147/271 (54%), Gaps = 35/271 (12%)		 NCBI
Show Blast
NP_177403.1 3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein [Arabidopsis thaliana]
Evalue: 5e-09 | Bitscore: 66
Identities = 77/276 (27%), Positives = 109/276 (39%), Gaps = 48/276 (17%)		 NCBI
Show Blast
XP_002531516.1 dfg10 protein, putative [Ricinus communis]
Evalue: 9e-09 | Bitscore: 65
Identities = 60/212 (28%), Positives = 89/212 (41%), Gaps = 37/212 (17%)		 NCBI
Show Blast
XP_002513007.1 dfg10 protein, putative [Ricinus communis]
Evalue: 1e-08 | Bitscore: 65
Identities = 61/217 (28%), Positives = 86/217 (39%), Gaps = 46/217 (21%)		 NCBI
Show Blast
AT1G72590.1 | Symbols: | 3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein |
Evalue: 7e-11 | Bitscore: 64
Identities = 58/220 (26%), Positives = 76/220 (34%), Gaps = 29/220 (13%)		 Tair
Show Blast
XP_001615828.1 3-oxo-5-alpha-steroid 4-dehydrogenase family protein [Plasmodium vivax SaI-1]
Evalue: 4e-08 | Bitscore: 63
Identities = 68/262 (25%), Positives = 102/262 (38%), Gaps = 42/262 (16%)		 NCBI
Show Blast
XP_002109440.1 hypothetical protein TRIADDRAFT_53471 [Trichoplax adhaerens]
Evalue: 4e-08 | Bitscore: 63
Identities = 42/130 (32%), Positives = 60/130 (46%), Gaps = 5/130 (3%)		 NCBI
Show Blast
NP_001053627.1 Os04g0576800 [Oryza sativa (japonica cultivar-group)]
Evalue: 1e-07 | Bitscore: 61
Identities = 64/218 (29%), Positives = 88/218 (40%), Gaps = 47/218 (21%)		 NCBI
Show Blast
XP_002306143.1 predicted protein [Populus trichocarpa]
Evalue: 2e-07 | Bitscore: 60
Identities = 57/214 (26%), Positives = 82/214 (38%), Gaps = 38/214 (17%)		 NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

CDS  

Locus ID
Ot12g00160
Redo Blast
CDS Length
981 nucleotides
CDS Sequence

Protein 

Locus ID
Ot12g00160
Redo Blast
Protein Length
327 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

n/a